RetrogeneDB ID: | retro_fcat_3 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:110150119..110150914(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000029503 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000013106 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.82 % |
Parental protein coverage: | 68.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IHERTVSRKKK--SKRHKEDLDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLY |
IHERTVSRKKK..SKRHK.DLD.AGGE.YPMDIWLLLASYIRPEDIVNFSLICKN.WTVTCTAAFWTRLY | |
Retrocopy | IHERTVSRKKKKKSKRHK-DLDRAGGEKYPMDIWLLLASYIRPEDIVNFSLICKNGWTVTCTAAFWTRLY |
Parental | RRHYTLDASLPLRLRPESMEKLRCLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLFWCRK |
RRHY.LDASLPLRLRPESMEKLRCLRACVIRSLYHMYEP.AARISKNPAIPESTPSTLKNSKCLLFWCRK | |
Retrocopy | RRHYMLDASLPLRLRPESMEKLRCLRACVIRSLYHMYEPIAARISKNPAIPESTPSTLKNSKCLLFWCRK |
Parental | IVGNRQEPMWEFNFKFKKQSPRLKSKCTGGLQPPIQYEDVHTNPDQDCCLLQVTTLNFIFIPIVMGMIFT |
IVGNRQEPMWEFNFK.KKQSPRLKSK..GGLQPPIQY.DVHTNPDQDCCLLQVTTLNFIFIPIVMGMIFT | |
Retrocopy | IVGNRQEPMWEFNFKSKKQSPRLKSKYMGGLQPPIQYKDVHTNPDQDCCLLQVTTLNFIFIPIVMGMIFT |
Parental | LFTINVSTDMRHHRVRLVFQDSPVRGGRKLRSEQGVQIILDPVHSVRLF |
LFTINVSTDMRHHRVRLVFQDSPVRGG.KL..EQGVQIILDP.HSVRLF | |
Retrocopy | LFTINVSTDMRHHRVRLVFQDSPVRGGWKLCCEQGVQIILDPAHSVRLF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 37 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 29 .78 RPM |
SRP017611_liver | 0 .10 RPM | 14 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000008318 | 1 retrocopy | |
Felis catus | ENSFCAG00000013106 | 1 retrocopy |
retro_fcat_3 ,
|
Homo sapiens | ENSG00000163444 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000009834 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000018443 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000801 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000018106 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000000911 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000340 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000001864 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000003594 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000015473 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012466 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007009 | 1 retrocopy |