Parental gene: | TMEM183A, ENSPPYG00000000340 |
| Aliases: | None |
| Description: | transmembrane protein 183A [Source:HGNC Symbol;Acc:20173] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 1:47222441..47241853(-) |
>ENSPPYG00000000340
ATGGCCCGGGGGCCCGGCCCGCTAGGCAGGCCTCGCCCCGATACGGTCGCCATGCCCAAGAGAGGAAAGCGACTCAAGTT
CCGGGCCCACGACGCCTGCTCCGGCCGAGTGACCGTGGCGGATTACGCCAACTCGGATCCGGCGGTCGTGAGGTCTGGAC
GAGTCAAGAAAGCCGTAGCCAACGCTGTTCAGCAGGAAGTAAAATCTCTTTGTGGCTTGGAAGCCTCTCAGGTTCCTGCA
GAGGAAGCTCTTTCTGGGGCTGGTGAGCCCTGTGACATCATCGACAGCAGTGATGAGATGGAGGCCCAGGAGGAAAGCAT
CCATGAGAGAACTGTCTCCAGAAAAAAGAAAAGTAAGAGACACAAAGAAGAACTGGATGGTGCTGGAGAAGAGTATCCCA
TGGATATTTGGCTATTGCTGGCCTCCTATATCCGTCCTGAGGACATTGTGAATTTTTCCCTGATTTGTAAGAATGCCTGG
ACTGTCACTTGCACTGCTGCCTTTTGGACCAGGTTGTACCGAAGGCACTACACGCTGGATGCTTCCCTGCCTTTGCGTCT
GCGACCAGAGTCAATGGAGAAGCTGCGCTGTCTCCGGGCTTGTGTGATCCGATCTCTGTACCATATGTATGAGCCATTTG
CTGCTCGAATCTCCAAGAATCCAGCCATTCCAGAAAGCACCCCCAGCACATTAAAGAATTCCAAATGCTTACTTTTCTGG
TGCAGAAAGATTGTTGGGAACAGACAGGAACCAATGTGGGAATTCAACTTCAAGTTCAAAAAACAGTCCCCTAGGTTAAA
GAGCAAGTGTACAGGAGGATTGCAGCCTCCTGTTCAGTACGAAGATGTTCATACCAATCCAGACCAGGACTGCTGCCTAC
TGCAGGTCACCACCCTCAATTTCATCTTTATTCCGATTGTCATGGGAATGATATTTACTCTGTTTACTATCAATGTGAGC
ACGGACATGCGGCATCATCGAGTGAGACTGGTGTTCCAAGATTCCCCTGTCCATGGTGGTCGGAAACTGCGCAGTGAACA
GGGTGTGCAAGTCATCTTGGACCCAGTGCACAGTGTTCGGCTCTTTGACTGGTGGCATCCTCAGTACCCATTCTCCCTGA
GAGCATAG
ATGGCCCGGGGGCCCGGCCCGCTAGGCAGGCCTCGCCCCGATACGGTCGCCATGCCCAAGAGAGGAAAGCGACTCAAGTT
CCGGGCCCACGACGCCTGCTCCGGCCGAGTGACCGTGGCGGATTACGCCAACTCGGATCCGGCGGTCGTGAGGTCTGGAC
GAGTCAAGAAAGCCGTAGCCAACGCTGTTCAGCAGGAAGTAAAATCTCTTTGTGGCTTGGAAGCCTCTCAGGTTCCTGCA
GAGGAAGCTCTTTCTGGGGCTGGTGAGCCCTGTGACATCATCGACAGCAGTGATGAGATGGAGGCCCAGGAGGAAAGCAT
CCATGAGAGAACTGTCTCCAGAAAAAAGAAAAGTAAGAGACACAAAGAAGAACTGGATGGTGCTGGAGAAGAGTATCCCA
TGGATATTTGGCTATTGCTGGCCTCCTATATCCGTCCTGAGGACATTGTGAATTTTTCCCTGATTTGTAAGAATGCCTGG
ACTGTCACTTGCACTGCTGCCTTTTGGACCAGGTTGTACCGAAGGCACTACACGCTGGATGCTTCCCTGCCTTTGCGTCT
GCGACCAGAGTCAATGGAGAAGCTGCGCTGTCTCCGGGCTTGTGTGATCCGATCTCTGTACCATATGTATGAGCCATTTG
CTGCTCGAATCTCCAAGAATCCAGCCATTCCAGAAAGCACCCCCAGCACATTAAAGAATTCCAAATGCTTACTTTTCTGG
TGCAGAAAGATTGTTGGGAACAGACAGGAACCAATGTGGGAATTCAACTTCAAGTTCAAAAAACAGTCCCCTAGGTTAAA
GAGCAAGTGTACAGGAGGATTGCAGCCTCCTGTTCAGTACGAAGATGTTCATACCAATCCAGACCAGGACTGCTGCCTAC
TGCAGGTCACCACCCTCAATTTCATCTTTATTCCGATTGTCATGGGAATGATATTTACTCTGTTTACTATCAATGTGAGC
ACGGACATGCGGCATCATCGAGTGAGACTGGTGTTCCAAGATTCCCCTGTCCATGGTGGTCGGAAACTGCGCAGTGAACA
GGGTGTGCAAGTCATCTTGGACCCAGTGCACAGTGTTCGGCTCTTTGACTGGTGGCATCCTCAGTACCCATTCTCCCTGA
GAGCATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 96 .92 RPM |
| SRP007412_cerebellum | 117 .10 RPM |
| SRP007412_heart | 13 .31 RPM |
| SRP007412_kidney | 44 .25 RPM |
| SRP007412_liver | 43 .36 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000008318 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000013106 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000163444 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000009834 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000018443 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000000801 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000018106 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000000911 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000001864 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000003594 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000015473 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000012466 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000007009 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1333 | 83.82 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2627 | 88.67 | 53.87 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000000340 retrocopies