Parental gene:

TMEM183A, ENSPPYG00000000340

Aliases:None
Description:transmembrane protein 183A [Source:HGNC Symbol;Acc:20173]
Organism:Orangutan (Pongo abelii)
Coordinates:1:47222441..47241853(-)


>ENSPPYG00000000340
ATGGCCCGGGGGCCCGGCCCGCTAGGCAGGCCTCGCCCCGATACGGTCGCCATGCCCAAGAGAGGAAAGCGACTCAAGTT
CCGGGCCCACGACGCCTGCTCCGGCCGAGTGACCGTGGCGGATTACGCCAACTCGGATCCGGCGGTCGTGAGGTCTGGAC
GAGTCAAGAAAGCCGTAGCCAACGCTGTTCAGCAGGAAGTAAAATCTCTTTGTGGCTTGGAAGCCTCTCAGGTTCCTGCA
GAGGAAGCTCTTTCTGGGGCTGGTGAGCCCTGTGACATCATCGACAGCAGTGATGAGATGGAGGCCCAGGAGGAAAGCAT
CCATGAGAGAACTGTCTCCAGAAAAAAGAAAAGTAAGAGACACAAAGAAGAACTGGATGGTGCTGGAGAAGAGTATCCCA
TGGATATTTGGCTATTGCTGGCCTCCTATATCCGTCCTGAGGACATTGTGAATTTTTCCCTGATTTGTAAGAATGCCTGG
ACTGTCACTTGCACTGCTGCCTTTTGGACCAGGTTGTACCGAAGGCACTACACGCTGGATGCTTCCCTGCCTTTGCGTCT
GCGACCAGAGTCAATGGAGAAGCTGCGCTGTCTCCGGGCTTGTGTGATCCGATCTCTGTACCATATGTATGAGCCATTTG
CTGCTCGAATCTCCAAGAATCCAGCCATTCCAGAAAGCACCCCCAGCACATTAAAGAATTCCAAATGCTTACTTTTCTGG
TGCAGAAAGATTGTTGGGAACAGACAGGAACCAATGTGGGAATTCAACTTCAAGTTCAAAAAACAGTCCCCTAGGTTAAA
GAGCAAGTGTACAGGAGGATTGCAGCCTCCTGTTCAGTACGAAGATGTTCATACCAATCCAGACCAGGACTGCTGCCTAC
TGCAGGTCACCACCCTCAATTTCATCTTTATTCCGATTGTCATGGGAATGATATTTACTCTGTTTACTATCAATGTGAGC
ACGGACATGCGGCATCATCGAGTGAGACTGGTGTTCCAAGATTCCCCTGTCCATGGTGGTCGGAAACTGCGCAGTGAACA
GGGTGTGCAAGTCATCTTGGACCCAGTGCACAGTGTTCGGCTCTTTGACTGGTGGCATCCTCAGTACCCATTCTCCCTGA
GAGCATAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 96 .92 RPM
SRP007412_cerebellum 117 .10 RPM
SRP007412_heart 13 .31 RPM
SRP007412_kidney 44 .25 RPM
SRP007412_liver 43 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000008318 possible_ortholog 1 retrogene
retro_etel_1835,
Felis catus ENSFCAG00000013106 ortholog_one2many 1 retrogene
retro_fcat_3,
Homo sapiens ENSG00000163444 ortholog_one2one 3 retrogenes
retro_hsap_2808, retro_hsap_2863, retro_hsap_3157,
Gorilla gorilla ENSGGOG00000009834 ortholog_one2one 2 retrogenes
retro_ggor_1358, retro_ggor_2533,
Loxodonta africana ENSLAFG00000018443 ortholog_one2one 1 retrogene
retro_lafr_149,
Macaca mulatta ENSMMUG00000000801 ortholog_one2many 1 retrogene
retro_mmul_1532,
Nomascus leucogenys ENSNLEG00000018106 ortholog_one2one 2 retrogenes
retro_nleu_2541, retro_nleu_2663,
Otolemur garnettii ENSOGAG00000000911 ortholog_one2many 1 retrogene
retro_ogar_3209,
Pan troglodytes ENSPTRG00000001864 ortholog_one2one 2 retrogenes
retro_ptro_1902, retro_ptro_2278,
Rattus norvegicus ENSRNOG00000003594 ortholog_one2one 2 retrogenes
retro_rnor_1954, retro_rnor_2386,
Sus scrofa ENSSSCG00000015473 ortholog_one2one 1 retrogene
retro_sscr_879,
Ictidomys tridecemlineatus ENSSTOG00000012466 ortholog_one2one 1 retrogene
retro_itri_421,
Tarsius syrichta ENSTSYG00000007009 ortholog_one2one 1 retrogene
retro_tsyr_717,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1333 83.82 100.00
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2. retro_pabe_2627 88.67 53.87
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Download FASTA sequences of all ENSPPYG00000000340 retrocopies