Parental gene: | TMEM183A, ENSG00000163444 |
| Aliases: | TMEM183A, C1orf37 |
| Description: | transmembrane protein 183A [Source:HGNC Symbol;Acc:20173] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 1:202976513..202993976(+) |
>ENSG00000163444
ATGGCCCGGGGGCCCGGCCCGCTAGGCAGGCCTCGCCCCGATACGGTCGCCATGCCCAAGAGAGGAAAGCGACTCAAGTT
CCGGGCCCACGACGCCTGCTCCGGCCGAGTGACCGTGGCGGATTACGCCAACTCGGATCCGGCGGTCGTGAGGTCTGGAC
GAGTCAAGAAAGCCGTAGCCAACGCTGTTCAGCAGGAAGTAAAATCTCTTTGTGGCTTGGAAGCCTCTCAGGTTCCTGCA
GAGGAAGCTCTTTCTGGGGCTGGTGAGCCCTGTGACATCATCGACAGCAGTGATGAGATGGATGCCCAGGAGGAAAGCAT
CCATGAGAGAACTGTCTCCAGAAAAAAGAAAAGCAAGAGACACAAAGAAGAACTGGACGGGGCTGGAGGAGAAGAGTATC
CCATGGATATTTGGCTATTGCTGGCCTCCTATATCCGTCCTGAGGACATTGTGAATTTTTCCCTGATTTGTAAGAATGCC
TGGACTGTCACTTGCACTGCTGCCTTTTGGACCAGGTTGTACCGAAGGCACTACACGCTGGATGCTTCCCTGCCTTTGCG
TCTGCGACCAGAGTCAATGGAGAAGCTGCGCTGTCTCCGGGCTTGTGTGATCCGATCTCTGTACCATATGTATGAGCCAT
TTGCTGCTCGAATCTCCAAGAATCCAGCCATTCCAGAAAGCACCCCCAGCACATTAAAGAATTCCAAATGCTTACTTTTC
TGGTGCAGAAAGATTGTTGGGAACAGACAGGAACCAATGTGGGAATTCAACTTCAAGTTCAAAAAACAGTCCCCTAGGTT
AAAGAGCAAGTGTACAGGAGGATTGCAGCCTCCCGTTCAGTACGAAGATGTTCATACCAATCCAGACCAGGACTGCTGCC
TACTGCAGGTCACCACCCTCAATTTCATCTTTATTCCGATTGTCATGGGAATGATATTTACTCTGTTTACTATCAATGTG
AGCACGGACATGCGGCATCATCGAGTGAGACTGGTGTTCCAAGATTCCCCTGTCCATGGTGGTCGGAAACTGCGCAGTGA
ACAGGGTGTGCAAGTCATCCTGGACCCAGTGCACAGCGTTCGGCTCTTTGACTGGTGGCATCCTCAGTACCCATTCTCCC
TGAGAGCGTAG
ATGGCCCGGGGGCCCGGCCCGCTAGGCAGGCCTCGCCCCGATACGGTCGCCATGCCCAAGAGAGGAAAGCGACTCAAGTT
CCGGGCCCACGACGCCTGCTCCGGCCGAGTGACCGTGGCGGATTACGCCAACTCGGATCCGGCGGTCGTGAGGTCTGGAC
GAGTCAAGAAAGCCGTAGCCAACGCTGTTCAGCAGGAAGTAAAATCTCTTTGTGGCTTGGAAGCCTCTCAGGTTCCTGCA
GAGGAAGCTCTTTCTGGGGCTGGTGAGCCCTGTGACATCATCGACAGCAGTGATGAGATGGATGCCCAGGAGGAAAGCAT
CCATGAGAGAACTGTCTCCAGAAAAAAGAAAAGCAAGAGACACAAAGAAGAACTGGACGGGGCTGGAGGAGAAGAGTATC
CCATGGATATTTGGCTATTGCTGGCCTCCTATATCCGTCCTGAGGACATTGTGAATTTTTCCCTGATTTGTAAGAATGCC
TGGACTGTCACTTGCACTGCTGCCTTTTGGACCAGGTTGTACCGAAGGCACTACACGCTGGATGCTTCCCTGCCTTTGCG
TCTGCGACCAGAGTCAATGGAGAAGCTGCGCTGTCTCCGGGCTTGTGTGATCCGATCTCTGTACCATATGTATGAGCCAT
TTGCTGCTCGAATCTCCAAGAATCCAGCCATTCCAGAAAGCACCCCCAGCACATTAAAGAATTCCAAATGCTTACTTTTC
TGGTGCAGAAAGATTGTTGGGAACAGACAGGAACCAATGTGGGAATTCAACTTCAAGTTCAAAAAACAGTCCCCTAGGTT
AAAGAGCAAGTGTACAGGAGGATTGCAGCCTCCCGTTCAGTACGAAGATGTTCATACCAATCCAGACCAGGACTGCTGCC
TACTGCAGGTCACCACCCTCAATTTCATCTTTATTCCGATTGTCATGGGAATGATATTTACTCTGTTTACTATCAATGTG
AGCACGGACATGCGGCATCATCGAGTGAGACTGGTGTTCCAAGATTCCCCTGTCCATGGTGGTCGGAAACTGCGCAGTGA
ACAGGGTGTGCAAGTCATCCTGGACCCAGTGCACAGCGTTCGGCTCTTTGACTGGTGGCATCCTCAGTACCCATTCTCCC
TGAGAGCGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 15 .99 RPM |
| bodymap2_lung | 30 .98 RPM |
| bodymap2_breast | 28 .04 RPM |
| bodymap2_adipose | 24 .05 RPM |
| bodymap2_adrenal | 36 .11 RPM |
| bodymap2_skeletal_muscle | 7 .78 RPM |
| bodymap2_thyroid | 38 .10 RPM |
| bodymap2_prostate | 42 .12 RPM |
| bodymap2_colon | 40 .28 RPM |
| bodymap2_testis | 42 .34 RPM |
| bodymap2_brain | 48 .92 RPM |
| bodymap2_heart | 11 .34 RPM |
| bodymap2_white_blood_cells | 40 .14 RPM |
| bodymap2_lymph_node | 39 .11 RPM |
| bodymap2_ovary | 33 .54 RPM |
| bodymap2_kidney | 34 .41 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000008318 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000013106 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000009834 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000018443 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000000801 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000018106 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000000911 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000000340 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000001864 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000003594 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000015473 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000012466 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000007009 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_2808 | 60.91 | 57.71 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_2863 | 98.40 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_3157 | 93.36 | 55.85 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000163444 retrocopies