RetrogeneDB ID: | retro_sscr_879 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 6:95379547..95380461(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM183A | ||
Ensembl ID: | ENSSSCG00000015473 | ||
Aliases: | None | ||
Description: | transmembrane protein 183A [Source:HGNC Symbol;Acc:20173] |
Percent Identity: | 70.29 % |
Parental protein coverage: | 81.87 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | SLCGLEASQVPAVEALSGAGEPCDIIDSSDEIDAQEESIHERTVCRKKKSKRHKEDLDRAGGEEYPMDIW |
SLCGLEASQ.PAVEALSGAGEPCDIIDSS.E.DAQEES.HE.TV.RKKK.K.HK.D.DRAGGEEYPMDIW | |
Retrocopy | SLCGLEASQFPAVEALSGAGEPCDIIDSSNEMDAQEESMHEKTVSRKKKRKGHKDDWDRAGGEEYPMDIW |
Parental | -LLLAS-YIVLDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTLDASLPLRLRPESMEKLRCLRACVIRSL |
.LL....Y...D.VN.SLICK.AWT.T.TAAFWTRLYRRHY..DAS.P....PESMEKL..L.A.VIRS. | |
Retrocopy | LLLASD<YLPKDLVNCSLICKDAWTFTGTAAFWTRLYRRHYMPDASPPWCPQPESMEKLHRL*ALVIRS- |
Parental | YHMYEPFAARIS-KNPAIPESTPSTLKNSKCLLFWCRKIVGNRQEPMWEFNFKFKK-QSPRLKSKC-MGG |
..MYEPFA...S..N.AIPESTPST.KN.K.LLFW..K.V..RQEPM.EF..KFKK.QSP..K....MGG | |
Retrocopy | --MYEPFATFKS>QNLAIPESTPSTFKNAKSLLFWYEKSVETRQEPMREF--KFKK>QSPSIKEQVYMGG |
Parental | LQPPIQYEDVHTNPDQDCCLLQVTTLNFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVF-QDSPVHGGRK |
LQPP.QYE.VH.NPDQDCC.L.VTTL.F..IPIVMGMI.TLF.I.VS.DM.HHR...VF.QDSP.HG..K | |
Retrocopy | LQPPMQYENVHANPDQDCCPL*VTTLKFNSIPIVMGMIVTLFVISVSLDMWHHRMSRVF>QDSPDHGSQK |
Parental | LRSEQGVQVILDPVHSVRLFDWWHPQYPFSLRA |
LR.EQ..Q.ILD..HSV.L.D.WHPQ..FSL.A | |
Retrocopy | LRDEQVIQDILDLGHSVGLCDQWHPQNLFSLKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 21 .77 RPM |
SRP014902_testis | 0 .00 RPM | 35 .50 RPM |
SRP018288_heart | 0 .00 RPM | 34 .05 RPM |
SRP018288_kidney | 0 .10 RPM | 46 .10 RPM |
SRP018288_liver | 0 .00 RPM | 31 .82 RPM |
SRP018288_lung | 0 .00 RPM | 32 .79 RPM |
SRP018856_adipose | 0 .05 RPM | 28 .40 RPM |
SRP035408_brain | 0 .00 RPM | 32 .81 RPM |
SRP035408_liver | 0 .00 RPM | 24 .37 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000008318 | 1 retrocopy | |
Felis catus | ENSFCAG00000013106 | 1 retrocopy | |
Homo sapiens | ENSG00000163444 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000009834 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000018443 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000801 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000018106 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000000911 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000340 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000001864 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000003594 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000015473 | 1 retrocopy |
retro_sscr_879 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000012466 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007009 | 1 retrocopy |