Parental gene:

TMEM183A, ENSSSCG00000015473

Aliases:None
Description:transmembrane protein 183A [Source:HGNC Symbol;Acc:20173]
Organism:Pig (Sus scrofa)
Coordinates:9:125173392..125186034(+)


>ENSSSCG00000015473
ATGGCCGGGGGTCCTGGCCCACTAACACGGCCTCGCCCCGACACAGTCGCCATGCCCAAGAGAGGGAAGCGACTCAAGTT
CCGGGCCCAAGACGCCTGCTCTGGGCGAGTGACCGTGGCGGATTATGCCAACTCGGATCCGGCCGTCGTGAGGTCTGGAA
GGGTCAAGAAAGCCGTCGCCAATGCTGTTCAGCAGGAAGTAAAATCTCTTTGTGGCTTGGAAGCCTCCCAGGTTCCTGCA
GTGGAAGCTCTTTCTGGGGCTGGTGAGCCTTGTGACATCATCGACAGCAGTGATGAGATTGATGCCCAGGAGGAAAGCAT
CCATGAGAGAACTGTCTGCAGAAAAAAGAAAAGCAAGAGGCACAAAGAAGACCTGGACAGGGCTGGAGGAGAAGAGTATC
CCATGGATATTTGGCTCTTGCTGGCCTCCTATATCGTCCTGGACATTGTGAATTTTTCCCTGATTTGTAAGAATGCCTGG
ACTGTCACTTGCACTGCTGCCTTTTGGACCAGGTTGTACCGAAGACACTACACGCTGGATGCTTCTCTGCCTTTGCGCCT
GCGACCAGAGTCAATGGAGAAGCTGCGCTGTCTCCGGGCATGTGTGATCCGATCTCTGTATCATATGTATGAGCCATTTG
CTGCTCGAATCTCCAAGAATCCAGCCATTCCAGAAAGCACTCCTAGCACATTAAAGAATTCCAAATGCTTACTTTTCTGG
TGCAGAAAGATTGTTGGAAACAGACAGGAACCAATGTGGGAATTCAACTTCAAGTTCAAAAAGCAGTCCCCTAGATTAAA
GAGTAAGTGTATGGGAGGATTGCAGCCTCCCATTCAGTATGAAGATGTTCATACCAACCCAGACCAGGACTGCTGCCTAC
TGCAGGTCACCACCCTCAATTTCATCTTTATTCCAATTGTTATGGGAATGATATTTACCCTGTTTACTATCAATGTGAGC
ACGGACATGCGGCATCATCGAGTAAGACTGGTGTTCCAAGATTCTCCTGTCCACGGTGGTCGGAAACTGCGTAGTGAACA
GGGTGTGCAAGTCATCCTGGACCCAGTGCACAGCGTTCGACTTTTTGACTGGTGGCATCCTCAGTATCCGTTCTCCCTGA
GAGCATAG

Library Parental gene expression (RPM)
SRP014902_placenta 21 .77 RPM
SRP014902_testis 35 .50 RPM
SRP018288_heart 34 .05 RPM
SRP018288_kidney 46 .10 RPM
SRP018288_liver 31 .82 RPM
SRP018288_lung 32 .79 RPM
SRP018856_adipose 28 .40 RPM
SRP035408_brain 32 .81 RPM
SRP035408_liver 24 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000008318 possible_ortholog 1 retrogene
retro_etel_1835,
Felis catus ENSFCAG00000013106 ortholog_one2many 1 retrogene
retro_fcat_3,
Homo sapiens ENSG00000163444 ortholog_one2one 3 retrogenes
retro_hsap_2808, retro_hsap_2863, retro_hsap_3157,
Gorilla gorilla ENSGGOG00000009834 ortholog_one2one 2 retrogenes
retro_ggor_1358, retro_ggor_2533,
Loxodonta africana ENSLAFG00000018443 ortholog_one2one 1 retrogene
retro_lafr_149,
Macaca mulatta ENSMMUG00000000801 ortholog_one2many 1 retrogene
retro_mmul_1532,
Nomascus leucogenys ENSNLEG00000018106 ortholog_one2one 2 retrogenes
retro_nleu_2541, retro_nleu_2663,
Otolemur garnettii ENSOGAG00000000911 ortholog_one2many 1 retrogene
retro_ogar_3209,
Pongo abelii ENSPPYG00000000340 ortholog_one2one 2 retrogenes
retro_pabe_1333, retro_pabe_2627,
Pan troglodytes ENSPTRG00000001864 ortholog_one2one 2 retrogenes
retro_ptro_1902, retro_ptro_2278,
Rattus norvegicus ENSRNOG00000003594 ortholog_one2one 2 retrogenes
retro_rnor_1954, retro_rnor_2386,
Ictidomys tridecemlineatus ENSSTOG00000012466 ortholog_one2one 1 retrogene
retro_itri_421,
Tarsius syrichta ENSTSYG00000007009 ortholog_one2one 1 retrogene
retro_tsyr_717,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_879 70.29 81.87
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Download FASTA sequences of all ENSSSCG00000015473 retrocopies