RetrogeneDB ID: | retro_fcat_402 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:124263699..124264014(-) | ||
Located in intron of: | ENSFCAG00000012600 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1G1 | ||
Ensembl ID: | ENSFCAG00000000160 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 [Source:HGNC Symbol;Acc:864] |
Percent Identity: | 58.93 % |
Parental protein coverage: | 94.07 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SQSQGIQQLLQAEKR-AAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSHGSCST |
SQSQ.IQQL..A.K..A.E.V..A.K.KN.RLKQAKE.AQA.I.Q..L.REKEF.......LG....CST | |
Retrocopy | SQSQHIQQLFAASKKQATENVPVAHKQKNLRLKQAKE-AQATIKQFHL*REKEFQSRGS*GLGF--KCST |
Parental | EVEKETQEKMTILQTYFQQNRDEVLDNLLAFVCDIRPEIHEN |
EVEK......TILQ.YFQQNRD.V.DNLL.....I.PEIH.N | |
Retrocopy | EVEKT--QGITILQNYFQQNRDKVMDNLLVY--HIQPEIHGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 44 .31 RPM |
SRP017611_liver | 0 .00 RPM | 13 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012509 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000020461 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008083 | 15 retrocopies | |
Dipodomys ordii | ENSDORG00000014850 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000008080 | 3 retrocopies | |
Felis catus | ENSFCAG00000000160 | 2 retrocopies |
retro_fcat_1614, retro_fcat_402 ,
|
Loxodonta africana | ENSLAFG00000013437 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000008657 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000004899 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000019574 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001653 | 3 retrocopies | |
Mus musculus | ENSMUSG00000039105 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000026252 | 3 retrocopies |