RetrogeneDB ID: | retro_fcat_422 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:32458951..32459442(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000029904 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SOD1 | ||
Ensembl ID: | ENSFCAG00000002225 | ||
Aliases: | None | ||
Description: | superoxide dismutase 1, soluble [Source:HGNC Symbol;Acc:11179] |
Percent Identity: | 98.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SPRSSDRTPRVMEMKAVCVLKGQGPVEGTIHFVQKAGNGPVVVSGTITGLTEGEHGFHVHQFGDNTQGCT |
SP.SSDRTPRVMEMKAVCVLKGQGPVEGTIHFVQK.GNGPVVVSGTITGLTEGEHGFHVHQFGDNTQGCT | |
Retrocopy | SP*SSDRTPRVMEMKAVCVLKGQGPVEGTIHFVQK-GNGPVVVSGTITGLTEGEHGFHVHQFGDNTQGCT |
Parental | SAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVANVSMEDSLIALSGDHSIIGRTMV-VHEKRDDLG |
SAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVANVSMEDSLIALSGDHSIIGRTMV.VHEKRDDLG | |
Retrocopy | SAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVANVSMEDSLIALSGDHSIIGRTMV<VHEKRDDLG |
Parental | KGGNEESTQTGNAGSRLACGVIGIAK |
KGGNEESTQTGNAGSRLACGVIGIAK | |
Retrocopy | KGGNEESTQTGNAGSRLACGVIGIAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 8 .15 RPM | 25 .48 RPM |
SRP017611_kidney | 20 .71 RPM | 96 .67 RPM |
SRP017611_liver | 19 .41 RPM | 75 .01 RPM |