RetrogeneDB ID: | retro_tsyr_823 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_209352:1901..2192(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000003801 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SOD1 | ||
Ensembl ID: | ENSTSYG00000011342 | ||
Aliases: | None | ||
Description: | superoxide dismutase 1, soluble [Source:HGNC Symbol;Acc:11179] |
Percent Identity: | 79.38 % |
Parental protein coverage: | 63.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RGDGPVRGTINFEQKENGPVVVSGCITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDQER |
.G..P..GTI.FEQ..NGPV.VSGCI.GL.EG.HGFHVHQFGDNTQ.CTSAGPHFNPL.KKHGGPKDQER | |
Retrocopy | KGNAPMQGTIHFEQERNGPVMVSGCIPGLIEGQHGFHVHQFGDNTQNCTSAGPHFNPLFKKHGGPKDQER |
Parental | HVGDLGNVTAGKDGVANVLIEDSLISL |
..GDLG.VTAGKD.VANVL.E.SLISL | |
Retrocopy | YIGDLGDVTAGKDAVANVLTEYSLISL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |