Parental gene:

SOD1, ENSPTRG00000013847

Aliases:None
Description:Pan troglodytes superoxide dismutase 1, soluble (SOD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001009025]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:21:17768268..17776214(+)


>ENSPTRG00000013847
ATGGCGACGAAGGCCGTGTGCGTGCTGAAGGGCGATGGCCCAGTGCAGGGCATCATCAATTTCGAGCAGAAGGAAAGTAA
TGGACCAGTGAAGGTGTGGGGAAGCATTAAAGGACTGACTGAAGGCCTGCATGGATTCCATGTTCATGAGTTTGGAGATA
ATACAGCAGGCTGTACCAGTGCAGGTCCTCACTTTAATCCTCTATCCAGAAAACACGGTGGGCCAAAGGATGAAGAGAGG
CATGTTGGAGACTTGGGCAATGTGACTGCTGACAAAGATGGTGTGGCCGATGTGTCTATTGAAGATTCTGTGATCTCACT
CTCAGGAGACCATTGCATCATTGGCCGCACACTGGTGGTCCATGAAAAAGCAGATGACTTGGGCAAAGGTGGAAATGAAG
AAAGTACAAAGACAGGAAACGCTGGAAGTCGTTTGGCTTGTGGTGTAATTGGGATCGCCCAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 243 .52 RPM
SRP007412_cerebellum 203 .44 RPM
SRP007412_heart 170 .07 RPM
SRP007412_kidney 592 .15 RPM
SRP007412_liver 532 .32 RPM
SRP007412_testis 66 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018854 ortholog_one2many 1 retrogene
retro_btau_40,
Canis familiaris ENSCAFG00000008859 ortholog_one2one 1 retrogene
retro_cfam_1515,
Callithrix jacchus ENSCJAG00000008983 ortholog_one2one 3 retrogenes
retro_cjac_1477, retro_cjac_1986, retro_cjac_652,
Dasypus novemcinctus ENSDNOG00000006512 ortholog_one2one 1 retrogene
retro_dnov_816,
Dipodomys ordii ENSDORG00000013850 ortholog_one2one 3 retrogenes
retro_dord_217, retro_dord_41, retro_dord_603,
Erinaceus europaeus ENSEEUG00000015905 ortholog_one2one 1 retrogene
retro_eeur_305,
Felis catus ENSFCAG00000002225 ortholog_one2one 2 retrogenes
retro_fcat_1260, retro_fcat_422,
Homo sapiens ENSG00000142168 ortholog_one2one 3 retrogenes
retro_hsap_1637, retro_hsap_3591, retro_hsap_4117,
Gorilla gorilla ENSGGOG00000015554 ortholog_one2one 4 retrogenes
retro_ggor_1238, retro_ggor_2421, retro_ggor_2690, retro_ggor_2763,
Latimeria chalumnae ENSLACG00000013736 ortholog_one2one 1 retrogene
retro_lcha_51,
Loxodonta africana ENSLAFG00000010708 ortholog_one2many 1 retrogene
retro_lafr_127,
Microcebus murinus ENSMICG00000005253 ortholog_one2one 2 retrogenes
retro_mmur_378, retro_mmur_573,
Macaca mulatta ENSMMUG00000001711 ortholog_one2one 2 retrogenes
retro_mmul_1563, retro_mmul_2372,
Monodelphis domestica ENSMODG00000021041 ortholog_one2one 1 retrogene
retro_mdom_1376,
Mus musculus ENSMUSG00000022982 ortholog_one2one 1 retrogene
retro_mmus_2742,
Nomascus leucogenys ENSNLEG00000003545 ortholog_one2one 3 retrogenes
retro_nleu_1324, retro_nleu_302, retro_nleu_584,
Otolemur garnettii ENSOGAG00000014646 ortholog_one2many 3 retrogenes
retro_ogar_27, retro_ogar_3364, retro_ogar_702,
Ochotona princeps ENSOPRG00000007008 ortholog_one2one 1 retrogene
retro_opri_1190,
Pongo abelii ENSPPYG00000011354 ortholog_one2one 2 retrogenes
retro_pabe_1353, retro_pabe_3370,
Pteropus vampyrus ENSPVAG00000005216 ortholog_one2one 2 retrogenes
retro_pvam_281, retro_pvam_563,
Sarcophilus harrisii ENSSHAG00000004195 ortholog_one2one 1 retrogene
retro_shar_278,
Ictidomys tridecemlineatus ENSSTOG00000004434 ortholog_one2one 1 retrogene
retro_itri_1342,
Tupaia belangeri ENSTBEG00000007333 ortholog_one2one 4 retrogenes
retro_tbel_2131, retro_tbel_3531, retro_tbel_3611, retro_tbel_429,
Tarsius syrichta ENSTSYG00000011342 ortholog_one2one 17 retrogenes
retro_tsyr_1055, retro_tsyr_1064, retro_tsyr_1082, retro_tsyr_1112, retro_tsyr_1143, retro_tsyr_1176, retro_tsyr_1262, retro_tsyr_1275, retro_tsyr_1295, retro_tsyr_1369, retro_tsyr_1378, retro_tsyr_1590, retro_tsyr_2107, retro_tsyr_365, retro_tsyr_402, retro_tsyr_823, retro_tsyr_831,
Vicugna pacos ENSVPAG00000012396 ortholog_one2one 1 retrogene
retro_vpac_168,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1107 64.94 98.05
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_ptro_2431 71.58 61.04
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_ptro_2796 68.67 96.10
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPTRG00000013847 retrocopies