Parental gene:

SOD1, ENSFCAG00000002225

Aliases:None
Description:superoxide dismutase 1, soluble [Source:HGNC Symbol;Acc:11179]
Organism:Cat (Felis catus)
Coordinates:C2:13290963..13299343(-)


>ENSFCAG00000002225
AGCCCTCGAAGCTCGGACCGGACCCCGAGAGTCATGGAGATGAAGGCCGTGTGCGTGCTGAAGGGCCAGGGCCCGGTGGA
GGGCACCATCCACTTCGTACAGAAGGCTGGCAATGGGCCTGTTGTGGTATCAGGAACCATTACAGGATTGACTGAAGGAG
AGCATGGATTCCACGTCCATCAGTTTGGAGATAATACACAAGGCTGTACCAGTGCAGGCCCTCACTTTAATCCTCTATCC
AAAAAACATGGTGGGCCAAAAGATCAAGAGAGGCATGTTGGAGACCTTGGCAACGTAACTGCTGGCAAGGACGGTGTGGC
CAACGTGTCTATGGAAGATTCTCTGATTGCACTCTCAGGAGACCATTCCATCATTGGCCGCACGATGGTGGTCCACGAGA
AACGAGATGACTTGGGCAAAGGTGGAAATGAAGAAAGTACGCAAACGGGAAACGCTGGGAGTCGTTTGGCTTGTGGTGTC
ATTGGGATCGCCAAGTAA

Library Parental gene expression (RPM)
SRP017611_liver 75 .01 RPM
SRP017611_kidney 96 .67 RPM
SRP017611_brain 25 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018854 ortholog_one2many 1 retrogene
Canis familiaris ENSCAFG00000008859 ortholog_one2one 1 retrogene
Callithrix jacchus ENSCJAG00000008983 ortholog_one2one 3 retrogenes
Dasypus novemcinctus ENSDNOG00000006512 ortholog_one2one 1 retrogene
Dipodomys ordii ENSDORG00000013850 ortholog_one2one 3 retrogenes
Erinaceus europaeus ENSEEUG00000015905 ortholog_one2one 1 retrogene
Homo sapiens ENSG00000142168 ortholog_one2one 3 retrogenes
Gorilla gorilla ENSGGOG00000015554 ortholog_one2one 4 retrogenes
Latimeria chalumnae ENSLACG00000013736 ortholog_one2one 1 retrogene
Loxodonta africana ENSLAFG00000010708 ortholog_one2many 1 retrogene
Microcebus murinus ENSMICG00000005253 ortholog_one2one 2 retrogenes
Macaca mulatta ENSMMUG00000001711 ortholog_one2one 2 retrogenes
Monodelphis domestica ENSMODG00000021041 ortholog_one2one 1 retrogene
Mus musculus ENSMUSG00000022982 ortholog_one2one 1 retrogene
Nomascus leucogenys ENSNLEG00000003545 ortholog_one2one 3 retrogenes
Otolemur garnettii ENSOGAG00000014646 ortholog_one2many 3 retrogenes
Ochotona princeps ENSOPRG00000007008 ortholog_one2one 1 retrogene
Pongo abelii ENSPPYG00000011354 ortholog_one2one 2 retrogenes
Pan troglodytes ENSPTRG00000013847 ortholog_one2one 3 retrogenes
Pteropus vampyrus ENSPVAG00000005216 ortholog_one2one 2 retrogenes
Sarcophilus harrisii ENSSHAG00000004195 ortholog_one2one 1 retrogene
Ictidomys tridecemlineatus ENSSTOG00000004434 ortholog_one2one 1 retrogene
Tupaia belangeri ENSTBEG00000007333 ortholog_one2one 4 retrogenes
Tarsius syrichta ENSTSYG00000011342 ortholog_one2one 17 retrogenes
Vicugna pacos ENSVPAG00000012396 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_422 98.19 100.00
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2. retro_fcat_1260 69.49 70.30
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Download FASTA sequences of all ENSFCAG00000002225 retrocopies