RetrogeneDB ID: | retro_tsyr_1055 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_29085:3161..3597(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SOD1 | ||
Ensembl ID: | ENSTSYG00000011342 | ||
Aliases: | None | ||
Description: | superoxide dismutase 1, soluble [Source:HGNC Symbol;Acc:11179] |
Percent Identity: | 75.33 % |
Parental protein coverage: | 95.42 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MPMKAVCVLRGDGPVR-GTINFEQKENGPVVVSGCITGLTEGLHGFHVHQFGDNTQGCTSAGPHF-NPLS |
.PMKA.C.L..DGPV..GTI.FEQKEN.PVVV.G.ITGLTEG.HGFH.H.FGDN.Q.CTS..P...NPLS | |
Retrocopy | IPMKAFCLLKCDGPVQ<GTICFEQKENVPVVVEGHITGLTEGQHGFHIHFFGDNKQCCTSVQPFG>NPLS |
Parental | KKHGGPKDQERHVGDLGNVTAGK-DGVANVLIEDSLISLFGDHSIIGRTMVVHEKEDDLGKG-DNEESTK |
KKHG.PKDQ.RHVGDLGN.TAGK..GVA.VLIEDSLISL.GD.SIIG.TMVVHE..DDL.KG..NEE.TK | |
Retrocopy | KKHG*PKDQKRHVGDLGNMTAGK<NGVADVLIEDSLISLLGDYSIIGCTMVVHENADDLAKG<CNEENTK |
Parental | TGNAGSRLAC |
TGNAGSRL.C | |
Retrocopy | TGNAGSRLWC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |