RetrogeneDB ID: | retro_fcat_616 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:57545661..57546309(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000030293 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3L | ||
Ensembl ID: | ENSFCAG00000030159 | ||
Aliases: | None | ||
Description: | BCL2/adenovirus E1B 19kDa interacting protein 3-like [Source:HGNC Symbol;Acc:1085] |
Percent Identity: | 83.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSSHLVEQPPPPHNNNNNCEEGEQPLAPTAGLNSSWVELPMNSSNGNDNGNGKNGGLEHVPSSSSIHNGD |
MSSHLVE.PP.PHNNN..CEEGEQPL..TAGL.SSWVELPMNS.NGNDNGN.KN.GLEHVPSSSS...GD | |
Retrocopy | MSSHLVERPPLPHNNN--CEEGEQPLPLTAGLKSSWVELPMNSRNGNDNGNEKNTGLEHVPSSSSVCSGD |
Parental | MEKILLDAQHESGQSSSRASSHCDSPSPQEDGQIMFDVEMHTSRDHSSQ-SEEEVAEGEKEVDALKKSVD |
MEK.LL.AQHESGQSSSRASSHCDSPSPQEDGQIMF.V....SR.H.SQ..EE.VAE.EKEVD.LKKSVD | |
Retrocopy | MEKALLHAQHESGQSSSRASSHCDSPSPQEDGQIMFSVQIYASRAHNSQ<EEE-VAEEEKEVDPLKKSVD |
Parental | WVSDWSSRPENIPPKEFHFRHPKRSVSLSMRKSGAMKKGGIFSAE-FLKVFIPSLFLSHVLALGLGIYIG |
WVS.W.SRPENIPPKEFHFRHPK.S..LSMRKSGAMKKGGIFS.E.FLKVFIPS.FLSHVLALGL.IYIG | |
Retrocopy | WVSSWFSRPENIPPKEFHFRHPKCSIALSMRKSGAMKKGGIFSTE>FLKVFIPSFFLSHVLALGLHIYIG |
Parental | KRLSTPSASTY |
KRLSTPSASTY | |
Retrocopy | KRLSTPSASTY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 141 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 89 .04 RPM |
SRP017611_liver | 0 .10 RPM | 28 .31 RPM |