Parental gene:

Bnip3l, ENSRNOG00000009820

Aliases:Bnip3l, Nix
Description:BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [Source:RefSeq peptide;Acc:NP_543164]
Organism:Rat (Rattus norvegicus)
Coordinates:15:47927966..47951099(+)


>ENSRNOG00000009820
ATGTCTCACTTAGTCGAGCCGCCGCCGCCCCTGCACAACAACAACAACAACTGCGAGGAAGGGGAGCAGTCCCTGCCGCC
GCCCGCTGGCCTCAACAGTTCCTGGGTGGAGCTACCCATGAACAGCAGCAATGGCAACGGTAATGGAAATGGGAAGAATG
GGGGCCTGGAGCACGTTCCTTCCTCGTCTTCCATCCACAATGGAGACATGGAGAAGATCCTTCTGGATGCGCAGCATGAG
TCGGGACAGAGCAGCTCAAGAGGCAGTTCTCACTGTGACAGCCCTTCACCACAAGAAGACGGGCAAATAATGTTTGATGT
TGAGATGCACACCAGCAGGGACCACAGCTCTCAGTCAGAAGAAGAAGTTGTAGATGGAGAAAAAGAAGTTGAGGCTTTGA
AGAAAAGTGCAGACTGGGTATCAGACTGGTCCAGTAGACCCGAAAACATCCCACCCAAAGAGTTCCTTTTCAGACACCCT
AAGCGTGCAGCCTCTCTAAGCATGAGGAAGAGTGGAGCCATGAAGAAAGGGGGCATTTTCTCTGCAGAGTTCCTGAAGGT
CTTCATCCCATCTCTCTTCCTCTCTCACGTGTTGGCTTTGGGGCTGGGCATCTATATCGGAAAACGACTGAGCACACCTT
CTGCCAGCACCTACTGA

Library Parental gene expression (RPM)
SRP017611_liver 59 .03 RPM
SRP017611_kidney 129 .17 RPM
SRP017611_brain 122 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021307 ortholog_one2many 4 retrogenes
retro_btau_1148, retro_btau_1170, retro_btau_1790, retro_btau_449,
Choloepus hoffmanni ENSCHOG00000007732 ortholog_one2many 3 retrogenes
retro_chof_2356, retro_chof_2475, retro_chof_980,
Dasypus novemcinctus ENSDNOG00000016179 ortholog_one2many 1 retrogene
retro_dnov_2101,
Dipodomys ordii ENSDORG00000009336 ortholog_one2many 1 retrogene
retro_dord_169,
Erinaceus europaeus ENSEEUG00000006302 ortholog_one2many 1 retrogene
retro_eeur_269,
Echinops telfairi ENSETEG00000012037 ortholog_one2many 3 retrogenes
retro_etel_1178, retro_etel_1428, retro_etel_603,
Felis catus ENSFCAG00000030159 ortholog_one2many 2 retrogenes
retro_fcat_616, retro_fcat_944,
Macropus eugenii ENSMEUG00000011173 ortholog_one2many 1 retrogene
retro_meug_962,
Myotis lucifugus ENSMLUG00000014949 ortholog_one2many 1 retrogene
retro_mluc_2192,
Mustela putorius furo ENSMPUG00000000829 ortholog_many2many 1 retrogene
retro_mputfur_297,
Mus musculus ENSMUSG00000022051 ortholog_one2many 2 retrogenes
retro_mmus_482, retro_mmus_849,
Oryctolagus cuniculus ENSOCUG00000010542 ortholog_one2many 1 retrogene
retro_ocun_1460,
Otolemur garnettii ENSOGAG00000003163 ortholog_one2many 2 retrogenes
retro_ogar_1039, retro_ogar_2651,
Ochotona princeps ENSOPRG00000016284 ortholog_one2many 1 retrogene
retro_opri_1105,
Rattus norvegicus ENSRNOG00000017243 within_species_paralog 3 retrogenes
retro_rnor_1070, retro_rnor_2645, retro_rnor_2732,
Sus scrofa ENSSSCG00000009658 ortholog_one2many 1 retrogene
retro_sscr_511,
Ictidomys tridecemlineatus ENSSTOG00000004029 ortholog_one2many 1 retrogene
retro_itri_1525,
Tupaia belangeri ENSTBEG00000006361 ortholog_one2many 2 retrogenes
retro_tbel_3371, retro_tbel_4006,
Tarsius syrichta ENSTSYG00000011036 ortholog_one2many 4 retrogenes
retro_tsyr_1182, retro_tsyr_1602, retro_tsyr_162, retro_tsyr_1997,
Tursiops truncatus ENSTTRG00000004862 ortholog_one2many 1 retrogene
retro_ttru_725,
Vicugna pacos ENSVPAG00000000509 ortholog_one2many 2 retrogenes
retro_vpac_349, retro_vpac_534,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1183 75.61 74.31
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Download FASTA sequences of all ENSRNOG00000009820 retrocopies