RetrogeneDB ID:

retro_ggor_2010

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:3:190558867..190559335(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENOPH1
Ensembl ID:ENSGGOG00000003719
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2010
GGGAATGGAGTGGATGATCTGCAACAGATGATCCAGGCCGTGGTAGATAAGGTGTGCTGGCAGATGTCCCTGGACGGAAA
GACCACCATGTTCAAACAGCTGCAGGACCACATGTGAAGGGCAGCATTCACAGCTCGGACCATGAAAGCAGAGTTCTTTG
CAGATGTGTTTCCAGCAGTCAGGAAGTGGAAAGAGGCTGGAATGAAGGTGTATATCTATTCCTCGGGGAGTGTAGAGGCA
CAGAAACTGTTATTCGGGCAGTCTGCGAAGGGAAAGATTCTTGAGCTTATTGATGGTCCCTTTGATACCAAGATTGGACA
CAGAGTAGAGAATGAAAGTTATCAAAGGATTGCAGACTGCACTGGGGGCTCAACCAACAACACTTTGTTTCTGACAGATG
TTACTCAAGAGGCCGGTGCTGCTGAGGAAGCAGATATGCACGAAGCGGTGGTGGTGAGACTTGGAGAC

ORF - retro_ggor_2010 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.77 %
Parental protein coverage: 59.77 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGNGVDDLQQMIQAVVDNVCWQMSLDRKTTALKQLQGHMWRAAFTAGRMKAEFFADVVPAVRKWREAGMKV
GNGVDDLQQMIQAVVD.VCWQMSLD.KTT..KQLQ.HM.RAAFTA..MKAEFFADV.PAVRKW.EAGMKV
RetrocopyGNGVDDLQQMIQAVVDKVCWQMSLDGKTTMFKQLQDHM*RAAFTARTMKAEFFADVFPAVRKWKEAGMKV
ParentalYIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTKIGHKVESESYRKIADSIGCSTNNILFLTDVTREASA
YIYSSGSVEAQKLLFG.S..G.ILEL.DG.FDTKIGH.VE.ESY..IAD..G.STNN.LFLTDVT.EA.A
RetrocopyYIYSSGSVEAQKLLFGQSAKGKILELIDGPFDTKIGHRVENESYQRIADCTGGSTNNTLFLTDVTQEAGA
ParentalAEEADVHVAVVVRPGN
AEEAD.H.AVVVR.G.
RetrocopyAEEADMHEAVVVRLGD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 46 .32 RPM
SRP007412_cerebellum 0 .00 RPM 23 .76 RPM
SRP007412_heart 0 .00 RPM 3 .41 RPM
SRP007412_kidney 0 .00 RPM 16 .11 RPM
SRP007412_liver 0 .00 RPM 8 .81 RPM
SRP007412_testis 0 .10 RPM 15 .02 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2010 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2010 has 3 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_2900
Pan troglodytes retro_ptro_1960
Pongo abelii retro_pabe_2399

Parental genes homology:
Parental genes homology involve 14 parental genes, and 19 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000051402 retrocopies
Choloepus hoffmanni ENSCHOG000000032834 retrocopies
Callithrix jacchus ENSCJAG000000152512 retrocopies
Equus caballus ENSECAG000000196121 retrocopy
Erinaceus europaeus ENSEEUG000000042741 retrocopy
Homo sapiens ENSG000001452931 retrocopy
Gorilla gorilla ENSGGOG00000003719 1 retrocopy
retro_ggor_2010 ,
Loxodonta africana ENSLAFG000000086191 retrocopy
Macropus eugenii ENSMEUG000000114581 retrocopy
Myotis lucifugus ENSMLUG000000144601 retrocopy
Otolemur garnettii ENSOGAG000000025021 retrocopy
Pongo abelii ENSPPYG000000148871 retrocopy
Pan troglodytes ENSPTRG000000162181 retrocopy
Tursiops truncatus ENSTTRG000000018001 retrocopy



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