RetrogeneDB ID: | retro_hsap_2900 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:188707249..188707717(-) | ||
Located in intron of: | ENSG00000188001 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000236182 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENOPH1 | ||
Ensembl ID: | ENSG00000145293 | ||
Aliases: | ENOPH1, E1, MASA, MST145, mtnC | ||
Description: | enolase-phosphatase 1 [Source:HGNC Symbol;Acc:24599] |
Percent Identity: | 83.97 % |
Parental protein coverage: | 59.77 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GNGVDDLQQMIQAVVDNVCWQMSLDRKTTALKQLQGHMWRAAFTAGRMKAEFFADVVPAVRKWREAGMKV |
GNGVDDLQQMIQAVVD.VCWQMSLD.KTT..KQLQ.H..RAAFTA..MKAEFFADV.PAVRKW.EAGMKV | |
Retrocopy | GNGVDDLQQMIQAVVDKVCWQMSLDGKTTMFKQLQDHT*RAAFTARPMKAEFFADVFPAVRKWKEAGMKV |
Parental | YIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTKIGHKVESESYRKIADSIGCSTNNILFLTDVTREASA |
YIYSSGSVEAQKLLFG.S..G.ILELVDG.FDTKIGHKVE.ESY..IAD..G.STNNILFLTDVT.EASA | |
Retrocopy | YIYSSGSVEAQKLLFGQSAKGKILELVDGPFDTKIGHKVENESYQRIADCTGGSTNNILFLTDVTQEASA |
Parental | AEEADVHVAVVVRPGN |
AEEADVHVAVVVR.G. | |
Retrocopy | AEEADVHVAVVVRLGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 16 .36 RPM |
bodymap2_adrenal | 0 .00 RPM | 34 .59 RPM |
bodymap2_brain | 0 .00 RPM | 106 .00 RPM |
bodymap2_breast | 0 .08 RPM | 19 .63 RPM |
bodymap2_colon | 0 .00 RPM | 28 .73 RPM |
bodymap2_heart | 0 .00 RPM | 14 .01 RPM |
bodymap2_kidney | 0 .00 RPM | 40 .78 RPM |
bodymap2_liver | 0 .04 RPM | 15 .78 RPM |
bodymap2_lung | 0 .00 RPM | 29 .82 RPM |
bodymap2_lymph_node | 0 .00 RPM | 30 .02 RPM |
bodymap2_ovary | 0 .00 RPM | 31 .77 RPM |
bodymap2_prostate | 0 .00 RPM | 35 .52 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 8 .31 RPM |
bodymap2_testis | 0 .00 RPM | 22 .83 RPM |
bodymap2_thyroid | 0 .04 RPM | 31 .88 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 34 .47 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1960 |
Gorilla gorilla | retro_ggor_2010 |
Pongo abelii | retro_pabe_2399 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005140 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003283 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000015251 | 2 retrocopies | |
Equus caballus | ENSECAG00000019612 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000004274 | 1 retrocopy | |
Homo sapiens | ENSG00000145293 | 1 retrocopy |
retro_hsap_2900 ,
|
Gorilla gorilla | ENSGGOG00000003719 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008619 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011458 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014460 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002502 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014887 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016218 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001800 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |