RetrogeneDB ID:

retro_ggor_2109

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:4:114861290..114862005(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FAM64A
Ensembl ID:ENSGGOG00000012309
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2109
ATGGCTTCCTAGTGGCAGGGAATGGGGGCCTCTGTGCGCCGGAAATCTCTACAGCACCAGGAGCAGCTGGAGGACAGCAA
GGAGCTGCAGCCTTTGGCCAGCCATCAGGAGACCTCCACCGGGGCCCTGAGTACCCTAAGCAGACAGTTCCAAAGGAGGC
TGCCCCTGAGAGCTGTCAATCTCAGCCTCCAGGCAGGCCCCTCCTGGAAACGCCTGGAAACACCAGAGCCAGGGCCACAG
GGCCTCCAGGCTGCAGCTCCCTCAGCTAAGAGTGCCTTGGGTGCCAAGTCCCAGAGAATCCAGGAGTCCTGCCAAAGCAG
CACCGAATGGCTGGTGGAGACCCAGGTGAAGGCCAGGAGGAGGAAGAGAGGGGCACAGAGGGCAGTGGATCACCAACTCA
CAGCCGGAGCCACGAGAGCACCCGGCTGTCTGGAGCCGCCCCTGCCCACTCAGCCGCAGACCCCTGGGAGAAGGAGCATC
ACCACCTCTCTGCCCCATAGGCTCACGTGCCCACCCAGTAAGGCTGTCGAGGCGGGAGGCTGCCTTCCGGAGCCCCTACT
CCTCAGAAGAGCCCCTCTGCTCTCCCAGTGAGTCTGACAGTGATCGAGGGACGGCGGGGGCGGGAACTCAGCATCTCCAG
AAGCTCTCCCAAGAGCTGGACGAAGCTATTATGGCGGAAGAGAGTGGTGACATGACCGTCTCTCTCATCCATGAC

ORF - retro_ggor_2109 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.65 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMASRWQSMGTSVRRRSLQHQEQLEDSKELQPVVSHQETSVGALGSLCRQFQRRLPLRAVNLNLRAGPSWK
MAS.WQ.MG.SVRR.SLQHQEQLEDSKELQP..SHQETS.GAL..L.RQFQRRLPLRAVNL.L.AGPSWK
RetrocopyMAS*WQGMGASVRRKSLQHQEQLEDSKELQPLASHQETSTGALSTLSRQFQRRLPLRAVNLSLQAGPSWK
ParentalRLETPEPGQQGLQAAARSAKSALGAVSQRIQESCQSGTKWLVETQVKARRRKRGAQK-GSGSPTHSLSQK
RLETPEPG.QGLQAAA.SAKSALGA.SQRIQESCQS.T.WLVETQVKARRRKRGAQ..GSGSPTHS.S..
RetrocopyRLETPEPGPQGLQAAAPSAKSALGAKSQRIQESCQSSTEWLVETQVKARRRKRGAQR<GSGSPTHSRSHE
ParentalSTRLSGAAPAHSAADPWEKEHYRLSA-RMGSRAHPLRRSRREAAFRSPYSSTEPLCSPSESDSDLEPVGA
STRLSGAAPAHSAADPWEKEH..LSA...GSRAHP.R.SRREAAFRSPYSS.EPLCSPSESDSD....GA
RetrocopySTRLSGAAPAHSAADPWEKEHHHLSA<PIGSRAHPVRLSRREAAFRSPYSSEEPLCSPSESDSDRGTAGA
ParentalGIQHLQKLSQELDEAIMAEESGDI-VSLIHD
G.QHLQKLSQELDEAIMAEESGD..VSLIHD
RetrocopyGTQHLQKLSQELDEAIMAEESGDMTVSLIHD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 1 .29 RPM
SRP007412_cerebellum 0 .00 RPM 2 .72 RPM
SRP007412_heart 0 .00 RPM 0 .03 RPM
SRP007412_kidney 0 .00 RPM 0 .29 RPM
SRP007412_liver 0 .00 RPM 0 .37 RPM
SRP007412_testis 0 .00 RPM 0 .41 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2109 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2109 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Pongo abelii retro_pabe_2545

Parental genes homology:
Parental genes homology involve 10 parental genes, and 22 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000069971 retrocopy
Homo sapiens ENSG000001291953 retrocopies
Gorilla gorilla ENSGGOG00000012309 3 retrocopies
retro_ggor_1801, retro_ggor_2091, retro_ggor_2109 ,
Macaca mulatta ENSMMUG000000177603 retrocopies
Mus musculus ENSMUSG000000208081 retrocopy
Nomascus leucogenys ENSNLEG000000091643 retrocopies
Otolemur garnettii ENSOGAG000000274331 retrocopy
Pongo abelii ENSPPYG000000078773 retrocopies
Pan troglodytes ENSPTRG000000086413 retrocopies
Rattus norvegicus ENSRNOG000000080401 retrocopy



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