RetrogeneDB ID: | retro_ggor_2109 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 4:114861290..114862005(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM64A | ||
Ensembl ID: | ENSGGOG00000012309 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MASRWQSMGTSVRRRSLQHQEQLEDSKELQPVVSHQETSVGALGSLCRQFQRRLPLRAVNLNLRAGPSWK |
MAS.WQ.MG.SVRR.SLQHQEQLEDSKELQP..SHQETS.GAL..L.RQFQRRLPLRAVNL.L.AGPSWK | |
Retrocopy | MAS*WQGMGASVRRKSLQHQEQLEDSKELQPLASHQETSTGALSTLSRQFQRRLPLRAVNLSLQAGPSWK |
Parental | RLETPEPGQQGLQAAARSAKSALGAVSQRIQESCQSGTKWLVETQVKARRRKRGAQK-GSGSPTHSLSQK |
RLETPEPG.QGLQAAA.SAKSALGA.SQRIQESCQS.T.WLVETQVKARRRKRGAQ..GSGSPTHS.S.. | |
Retrocopy | RLETPEPGPQGLQAAAPSAKSALGAKSQRIQESCQSSTEWLVETQVKARRRKRGAQR<GSGSPTHSRSHE |
Parental | STRLSGAAPAHSAADPWEKEHYRLSA-RMGSRAHPLRRSRREAAFRSPYSSTEPLCSPSESDSDLEPVGA |
STRLSGAAPAHSAADPWEKEH..LSA...GSRAHP.R.SRREAAFRSPYSS.EPLCSPSESDSD....GA | |
Retrocopy | STRLSGAAPAHSAADPWEKEHHHLSA<PIGSRAHPVRLSRREAAFRSPYSSEEPLCSPSESDSDRGTAGA |
Parental | GIQHLQKLSQELDEAIMAEESGDI-VSLIHD |
G.QHLQKLSQELDEAIMAEESGD..VSLIHD | |
Retrocopy | GTQHLQKLSQELDEAIMAEESGDMTVSLIHD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1 .29 RPM |
SRP007412_cerebellum | 0 .00 RPM | 2 .72 RPM |
SRP007412_heart | 0 .00 RPM | 0 .03 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .29 RPM |
SRP007412_liver | 0 .00 RPM | 0 .37 RPM |
SRP007412_testis | 0 .00 RPM | 0 .41 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_2545 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006997 | 1 retrocopy | |
Homo sapiens | ENSG00000129195 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000012309 | 3 retrocopies |
retro_ggor_1801, retro_ggor_2091, retro_ggor_2109 ,
|
Macaca mulatta | ENSMMUG00000017760 | 3 retrocopies | |
Mus musculus | ENSMUSG00000020808 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009164 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000027433 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007877 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000008641 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000008040 | 1 retrocopy |