RetrogeneDB ID: | retro_hsap_3030 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:26875260..26875971(-) | ||
Located in intron of: | ENSG00000109689 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000248340 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM64A | ||
Ensembl ID: | ENSG00000129195 | ||
Aliases: | FAM64A, CATS, RCS1 | ||
Description: | family with sequence similarity 64, member A [Source:HGNC Symbol;Acc:25483] |
Percent Identity: | 75.62 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MASRWQNMGTSVRRRSLQHQEQLEDSKELQPVVSH-QETSVGALGSLCRQFQRRLPLRAVNLNLRAGPSW |
MAS..Q..G.SVRRRSLQ.QEQL..SKELQPV.SH.QET...ALGSLCRQFQRRLPL.A.NLNL...PS. | |
Retrocopy | MASQRQGVGASVRRRSLQYQEQLKNSKELQPVASH>QETPAAALGSLCRQFQRRLPLTAINLNLWGDPSC |
Parental | KRLETPEPGQQGLQAAARSAKSALGAVSQRIQ-ESCQSGTKWLVETQVKARRRKRGAQKGSGSPTHSLSQ |
K.LETPEPGQQ.LQAA...A.SA........Q.ES....TKWLVETQVKARRRKRGAQK.SGS.THSLSQ | |
Retrocopy | KHLETPEPGQQSLQAA---ARSAKSTSGAKSQ>ESRSPDTKWLVETQVKARRRKRGAQKSSGSLTHSLSQ |
Parental | KSTRLSGAAPAHSAADPWEKEHHRLSVRMGSHAHPLRRSRREAAF-RSPYSSTEPLCSPSESDSDLEPVG |
KST.LSG.AP.HSAADPWEKEHH.LS.RMGS..HPLRR.RRE.A..R.PY..TEPLCSPSESDSDLEPV. | |
Retrocopy | KSTQLSGGAPVHSAADPWEKEHHCLSARMGSRTHPLRRLRRESAL>RAPYPLTEPLCSPSESDSDLEPVE |
Parental | AGIQHLQKLSQELDEAIMAEESGDI-VSLIHD |
A.IQHLQKLSQELDEAIMAEESGD..VSLI.D | |
Retrocopy | AEIQHLQKLSQELDEAIMAEESGDMSVSLIYD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 0 .10 RPM |
bodymap2_adrenal | 0 .14 RPM | 0 .10 RPM |
bodymap2_brain | 0 .00 RPM | 0 .12 RPM |
bodymap2_breast | 0 .14 RPM | 0 .08 RPM |
bodymap2_colon | 0 .00 RPM | 0 .17 RPM |
bodymap2_heart | 0 .00 RPM | 0 .09 RPM |
bodymap2_kidney | 0 .04 RPM | 0 .02 RPM |
bodymap2_liver | 0 .00 RPM | 0 .00 RPM |
bodymap2_lung | 0 .00 RPM | 0 .11 RPM |
bodymap2_lymph_node | 0 .00 RPM | 0 .09 RPM |
bodymap2_ovary | 0 .08 RPM | 0 .73 RPM |
bodymap2_prostate | 0 .00 RPM | 0 .12 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .11 RPM |
bodymap2_testis | 0 .00 RPM | 0 .38 RPM |
bodymap2_thyroid | 0 .00 RPM | 0 .38 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .10 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2044 |
Gorilla gorilla | retro_ggor_2091 |
Pongo abelii | retro_pabe_2509 |
Macaca mulatta | retro_mmul_1935 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006997 | 1 retrocopy | |
Homo sapiens | ENSG00000129195 | 3 retrocopies |
retro_hsap_2371, retro_hsap_3030 , retro_hsap_3071,
|
Gorilla gorilla | ENSGGOG00000012309 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000017760 | 3 retrocopies | |
Mus musculus | ENSMUSG00000020808 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009164 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000027433 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007877 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000008641 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000008040 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .04 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .08 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .06 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .06 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .06 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |