RetrogeneDB ID: | retro_mmul_959 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 12:66169233..66169850(-) | ||
Located in intron of: | ENSMMUG00000031290 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM64A | ||
Ensembl ID: | ENSMMUG00000017760 | ||
Aliases: | None | ||
Description: | family with sequence similarity 64, member A [Source:HGNC Symbol;Acc:25483] |
Percent Identity: | 75.85 % |
Parental protein coverage: | 86.13 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | ASHQETSAGALGSLCRQFQRRLPLRAVNLNLCTGPSWKRLETPEPGQQGLQAAARSAKSALGAMSQRIQE |
ASHQ..S..ALGSL.RQFQRRL.LRA.NLN.C.G.SWK.LETPEPG.QG.QA.A.SAKSALGAMSQRIQE | |
Retrocopy | ASHQDNSTWALGSLRRQFQRRLTLRAINLNFCAGLSWKCLETPEPG*QGFQAIAHSAKSALGAMSQRIQE |
Parental | SCQSGTKWLVETHVKARRRKRGAQTGSGSPAHSLSQKSTRLSGAAPAHS-ATEPWEKERHHLSARMGSRA |
SCQSGTKWLV...VK.RRRKRGAQ.GSGSP.HSLSQKSTRLSG.APAH..AT..WEKE.H.LSA..GS.A | |
Retrocopy | SCQSGTKWLVAIQVKPRRRKRGAQKGSGSPTHSLSQKSTRLSGDAPAHE<ATDLWEKEHHDLSAQIGSHA |
Parental | HPSRRSRREAAFRSPYSSTEPLCSPRQSDSDPEPVGAGIQHLQKLSQELEEAIMAXXSG-DIISLIH |
.P..RS..EAAF.SPYSS..PLCSP.QSDSD.EP.GAGIQH..KLSQ.L.EAIMA..SG.DI.SLIH | |
Retrocopy | YPLWRSTWEAAFWSPYSSA*PLCSPSQSDSDLEPMGAGIQHF*KLSQKLDEAIMAEESGADILSLIH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .22 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .06 RPM |
SRP007412_heart | 0 .00 RPM | 0 .06 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .04 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2371 |
Pan troglodytes | retro_ptro_1734 |
Gorilla gorilla | retro_ggor_1801 |
Pongo abelii | retro_pabe_2141 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006997 | 1 retrocopy | |
Homo sapiens | ENSG00000129195 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000012309 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000017760 | 3 retrocopies |
retro_mmul_1778, retro_mmul_1935, retro_mmul_959 ,
|
Mus musculus | ENSMUSG00000020808 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009164 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000027433 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007877 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000008641 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000008040 | 1 retrocopy |