RetrogeneDB ID: | retro_mmul_1935 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:21644400..21645110(-) | ||
Located in intron of: | ENSMMUG00000009439 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM64A | ||
Ensembl ID: | ENSMMUG00000017760 | ||
Aliases: | None | ||
Description: | family with sequence similarity 64, member A [Source:HGNC Symbol;Acc:25483] |
Percent Identity: | 74.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MASRWQSMGTSVRRRSLRHQEQLEDSKELQPVASH-QETSAGALGSLCRQFQRRLPLRAVNLNLCTGPSW |
MASRWQ..G.SVR.RSL.HQEQLEDSKELQPVASH.QETSA.ALGSLCRQFQRRLPL.AVNLNL...PSW | |
Retrocopy | MASRWQAVGASVRWRSLQHQEQLEDSKELQPVASH>QETSATALGSLCRQFQRRLPLTAVNLNLWGDPSW |
Parental | KRLETPEPGQQGLQAAARSAKSALGAMSQRIQ-ESCQSGTKWLVETHVKARRRKRGAQTGSGSP-AHSLS |
K.LETPEPGQQ.LQAAAR...SA..A.....Q.ES....TKWLVET.VKARRRKRGAQ..SGSP.AHSLS | |
Retrocopy | KHLETPEPGQQSLQAAAR---SAKSALDAKYQ>ESKSPDTKWLVETQVKARRRKRGAQKSSGSPQAHSLS |
Parental | QKSTRLSGAAPAHSATEPWEKERHHLSARMGSRAHPSRRSRREAAFRSPYSSTEPLCSPRQSDSDPEPVG |
QKST.LSG.APAHSA...WEKE.H.LSARMGSR.HP.R..R.E.AF.SPYS.TEPLCSP..SDSD..PV. | |
Retrocopy | QKSTQLSGGAPAHSAADLWEKEHHCLSARMGSRTHPLRQLRQESAFQSPYSLTEPLCSPSESDSDLKPVE |
Parental | AGIQHLQKLSQELEEAIMAXXSGDI-ISLIHD |
A..QHLQKLSQEL.EAIMA..SGD...SL..D | |
Retrocopy | AE-QHLQKLSQELDEAIMAEESGDMSVSLTDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .22 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .06 RPM |
SRP007412_heart | 0 .00 RPM | 0 .06 RPM |
SRP007412_kidney | 0 .12 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3030 |
Pan troglodytes | retro_ptro_2044 |
Gorilla gorilla | retro_ggor_2091 |
Pongo abelii | retro_pabe_2509 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006997 | 1 retrocopy | |
Homo sapiens | ENSG00000129195 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000012309 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000017760 | 3 retrocopies |
retro_mmul_1778, retro_mmul_1935 , retro_mmul_959,
|
Mus musculus | ENSMUSG00000020808 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009164 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000027433 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007877 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000008641 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000008040 | 1 retrocopy |