RetrogeneDB ID: | retro_ggor_2175 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 5:58821168..58821733(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNASEH1 | ||
Ensembl ID: | ENSGGOG00000034822 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.58 % |
Parental protein coverage: | 66.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | SASPEVSEGRENQHGQESDAKAIKRLREPLDGDGHESAEPYA-KHMKPSVEPAPPVSRDMFSYMGDFVVV |
SASPEVSEG.ENQHGQES..KA.KRLREPLDGDG.ESAEPYA.KH.KPSV.PAPPVSRD.FSYMGDFVVV | |
Retrocopy | SASPEVSEGQENQHGQESETKASKRLREPLDGDGDESAEPYA<KHVKPSVKPAPPVSRDTFSYMGDFVVV |
Parental | YTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYT-DS |
Y.DGCCSSNGRRRPRAGI..YWGPG.PLNVGIRLPG.QTNQRAEIHAACKAIEQAKTQNINKLVLYT.DS | |
Retrocopy | YADGCCSSNGRRRPRAGIRIYWGPGYPLNVGIRLPGWQTNQRAEIHAACKAIEQAKTQNINKLVLYT<DS |
Parental | MFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWKMVL |
MFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQW...L | |
Retrocopy | MFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWASIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 7 .62 RPM |
SRP007412_cerebellum | 0 .08 RPM | 6 .62 RPM |
SRP007412_heart | 0 .00 RPM | 3 .16 RPM |
SRP007412_kidney | 0 .04 RPM | 4 .95 RPM |
SRP007412_liver | 0 .00 RPM | 2 .82 RPM |
SRP007412_testis | 0 .52 RPM | 6 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_18 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008547 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000035450 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012674 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000034822 | 2 retrocopies |
retro_ggor_2175 , retro_ggor_336,
|
Macropus eugenii | ENSMEUG00000003610 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014475 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000014491 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015400 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000025873 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002070 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013051 | 1 retrocopy |