RetrogeneDB ID: | retro_shar_245 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL834796.1:1415593..1416191(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000013051 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.68 % |
Parental protein coverage: | 68.86 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | AFVRNT-SPDHSTEQKKECNTQ-DHKMKPKK-RPCESSDEEEDPCSKLAKQNTDSIPSLSKNIFSYMGDA |
.FV.N..SPD..TEQ.KEC.T..D.KMKPKK.RP.ES.DEE..PCSKLAKQNTDS..S....IFSYMGDA | |
Retrocopy | SFVQNMISPDQ*TEQTKECKTW>DPKMKPKK<RPHESPDEEKEPCSKLAKQNTDSTFS*QM-IFSYMGDA |
Parental | AVVYTDGCCSSNGRRKARAGIGVYWGPGHPLNVGDRLPGRQ-TNQRAEIHAACKAIEQAKNQNISKLVLY |
A.VY..GCCSSNG..KA.AGIGVYWGPGHPLNVGDRLPG.Q..NQ.AEIHA.CKAIEQ.KNQNISKLVL. | |
Retrocopy | AMVYRNGCCSSNGKGKAQAGIGVYWGPGHPLNVGDRLPGQQ<SNQTAEIHAPCKAIEQSKNQNISKLVLS |
Parental | TDSM-FTI-NGITSWVKDWKKNGWKTSTGKEVINKEDFVKLDTLIQGIDIKWIHVPGHSGFAGNE |
..SM.F.I.NGI..WVK.WKKNGW.TSTGK.VINKEDFVK.DTLIQGI...W..V..HSGF.G.. | |
Retrocopy | PVSM>FNI>NGIAIWVKEWKKNGWTTSTGKDVINKEDFVKPDTLIQGIKLTWVYVSSHSGFSGKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008547 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000035450 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012674 | 1 retrocopy | |
Homo sapiens | ENSG00000171865 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000034822 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000003610 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014475 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000014491 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015400 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000025873 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011614 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002070 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013051 | 1 retrocopy |
retro_shar_245 ,
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