RetrogeneDB ID: | retro_mmul_544 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:160104164..160104999(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNASEH1 | ||
Ensembl ID: | ENSMMUG00000014475 | ||
Aliases: | None | ||
Description: | ribonuclease H1 precursor [Source:RefSeq peptide;Acc:NP_001244787] |
Percent Identity: | 67.62 % |
Parental protein coverage: | 97.9 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LAHRVALAAVSCRCGSRGFGMFYAVRRGRKTGVFLTWNECKAQVDRFPAARFKKFATEDEAWTFVRKSAS |
..H..AL.AV.CR.......M.YAV.R...TGVFLTW.EC.A.VD.FPAARFKKFATE.EAW.FVRKSAS | |
Retrocopy | VSHVPALIAVRCRRDRCSLRMAYAVGRACRTGVFLTWSECRA*VDLFPAARFKKFATENEAWAFVRKSAS |
Parental | PEVSEGQENQHGQELQMKASKRLREPLDGDGDESAEPYAKHMKPSMEPAPPVSRDTFSYM-GDFVVVYTD |
PE.SEGQ.N.H.QE.Q.KA.K.L.EPL.GDGDESAE..AK..K...EPAP..SRD.F....G..V..... | |
Retrocopy | PEGSEGQKNKHVQESQTKAIKGLHEPLNGDGDESAESCAKPVKQITEPAPRMSRDIFLHR>GFLVEYTDG |
Parental | GCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKAQNISKLVLYTDSMFTI |
.C.S.NG.RR...G..VYWGPGHPLNVGIRLPG.QTNQRAE.HAAC..IEQ..A.NI.KLV.YTDSMFT. | |
Retrocopy | CCSS-NGWRRALVGTDVYWGPGHPLNVGIRLPG*QTNQRAENHAACNTIEQGEAENIKKLVPYTDSMFTV |
Parental | NGITNWVQSWKENGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLARKGAKQLE |
N.ITNWVQ..K.N.WKTS.GKEV.NKEDFVALE.LTQ.M.IQW..VPGH.GFIGNE.ADRLAR.GAK..E | |
Retrocopy | NSITNWVQGRKKNRWKTSTGKEVMNKEDFVALEKLTQSMGIQWILVPGHPGFIGNEKADRLAR-GAKHSE |
Parental | D |
D | |
Retrocopy | D |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 12 .89 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 14 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .95 RPM |
SRP007412_heart | 0 .00 RPM | 18 .37 RPM |
SRP007412_kidney | 0 .00 RPM | 12 .56 RPM |
SRP007412_liver | 0 .00 RPM | 8 .27 RPM |
SRP007412_testis | 0 .00 RPM | 26 .54 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_300 |
Pan troglodytes | retro_ptro_244 |
Gorilla gorilla | retro_ggor_336 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008547 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000035450 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012674 | 1 retrocopy | |
Homo sapiens | ENSG00000171865 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000034822 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000003610 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014475 | 2 retrocopies |
retro_mmul_544 , retro_mmul_799,
|
Monodelphis domestica | ENSMODG00000014491 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015400 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000025873 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011614 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002070 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013051 | 1 retrocopy |