RetrogeneDB ID:

retro_nleu_2959

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397526.1:385169..385779(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSNLEG00000000059
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:RNASEH1
Ensembl ID:ENSNLEG00000015400
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2959
CTGGAGGCCGTGCCCTGCCGCCGTGGCTCTCGCGGGATGTTCTATGCCTTGAGGAGGGGCCGCAAGACCGGGGTCTTTCT
GACCTGGAATGAGTGCAAAGCACAGGTGCACCGGTTTCCTGCTGCCAGATTTAAGAAGTTTGCCACAGAGGATGAGGCCT
GGGCCTTTGTCAGGAAATTTGCAAGCCCGGAAGTTTCAGAAGGGCAGGAAAATCAACATGGACAAGAATCGGAGACGAAA
GCCAGCCAAGCGACTCCGTGAGCCACTGGATGGAGATGGAGATGAAAGCGCAGAGCCGTATGCAAAGCACATGAAGCCGA
GCGTGGAGCCAACGCCTCCAGTTAGCAGAGAAACGTATTCCTACATGAGAGACTTCGTCGTCGTCTACACTGATGGCTGC
TGCTCCAGTAATGGGCGTAGAAGGCCACGAGCAGGAATCGGCGTTTACTGGGGGCCGGGCCGTCCTTTAAATGTAGGCAT
TAGATTTCCTGGGCGGCAGACAAACCAAAGAGTGGAAATTCATGCAGCCTGCAAAGCCATTGAACAAGCAAAGCCTCAGA
ACATCAATAAACTGGTTCTGTATACAGACAGTATGTTTATGATAAATGGT

ORF - retro_nleu_2959 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.38 %
Parental protein coverage: 71.88 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalLAAVPCRRGTRGFGMFYAVRRGRKTGVFLTWTECKAQVDRFPAARFKKFATEDEAWAFVRKSASPEVSEG
L.AVPCRRG.RG..MFYA.RRGRKTGVFLTW.ECKAQV.RFPAARFKKFATEDEAWAFVRK.ASPEVSEG
RetrocopyLEAVPCRRGSRG--MFYALRRGRKTGVFLTWNECKAQVHRFPAARFKKFATEDEAWAFVRKFASPEVSEG
ParentalQENQHGQESETKAS-KRLREPLDGDGDGDESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGCCS
QENQHGQESETKAS.KRLREPLDGDGD..ESAEPYAKHMKPSVEP.PPVSR.T.SYM.DFVVVYTDGCCS
RetrocopyQENQHGQESETKAS>KRLREPLDGDGD--ESAEPYAKHMKPSVEPTPPVSRETYSYMRDFVVVYTDGCCS
ParentalSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTING
SNGRRRPRAGIGVYWGPG.PLNVGIR.PGRQTNQR.EIHAACKAIEQAK.QNINKLVLYTDSMF.ING
RetrocopySNGRRRPRAGIGVYWGPGRPLNVGIRFPGRQTNQRVEIHAACKAIEQAKPQNINKLVLYTDSMFMING

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2959 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 22 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000085476 retrocopies
Callithrix jacchus ENSCJAG000000354501 retrocopy
Echinops telfairi ENSETEG000000126741 retrocopy
Homo sapiens ENSG000001718652 retrocopies
Gorilla gorilla ENSGGOG000000348222 retrocopies
Macropus eugenii ENSMEUG000000036101 retrocopy
Macaca mulatta ENSMMUG000000144752 retrocopies
Monodelphis domestica ENSMODG000000144911 retrocopy
Nomascus leucogenys ENSNLEG00000015400 2 retrocopies
retro_nleu_2399, retro_nleu_2959 ,
Pongo abelii ENSPPYG000000258731 retrocopy
Pan troglodytes ENSPTRG000000116141 retrocopy
Pteropus vampyrus ENSPVAG000000020701 retrocopy
Sarcophilus harrisii ENSSHAG000000130511 retrocopy



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