RetrogeneDB ID: | retro_mmul_799 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 11:34072855..34073712(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000019280 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNASEH1 | ||
Ensembl ID: | ENSMMUG00000014475 | ||
Aliases: | None | ||
Description: | ribonuclease H1 precursor [Source:RefSeq peptide;Acc:NP_001244787] |
Percent Identity: | 88.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSWLVFLAHRVALAAVSCRCGSRGFGMFYAVRRGRKTGVFLTWNECKAQVDRFPAARFKKFATEDEAWTF |
MSW.VFL.HRVAL.AVSC...S.GFGMFYAVRRG.KTGVFLTWNECKAQVD.FPAARFKKFATEDEAWTF | |
Retrocopy | MSWFVFLPHRVALVAVSCPRSSPGFGMFYAVRRGCKTGVFLTWNECKAQVDQFPAARFKKFATEDEAWTF |
Parental | VRKSASPEVSEGQENQHGQELQMKASKRLREPLDGDGDESAEP-YAKHMKPSMEPAPPVSRDTFSYMGDF |
VRKSAS.EVSEGQENQHGQE.QMKASK.L.E.LDGDGDES.EP.YAK.MK.SME.APPVSRD..SYMGDF | |
Retrocopy | VRKSASLEVSEGQENQHGQESQMKASKPLCESLDGDGDESTEP<YAKYMKQSMELAPPVSRDKVSYMGDF |
Parental | VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKAQNISKLVLYT |
VV.YTDGCC.SNG..R..AGI.VYWGPGHPLNVGIRLPGRQTNQRAEIHAACK.IEQAKAQNISKLVLYT | |
Retrocopy | VVIYTDGCCYSNGHKRQGAGICVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKTIEQAKAQNISKLVLYT |
Parental | DSMFTINGITNWVQSWKENGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLARK |
DSMFTINGITN.VQSWKENGWKTSAGKEVINKEDFVALERL.QGMDIQWMHVPGHSGFIGNEEA.RLAR. | |
Retrocopy | DSMFTINGITNCVQSWKENGWKTSAGKEVINKEDFVALERLSQGMDIQWMHVPGHSGFIGNEEAGRLARE |
Parental | GAKQLED |
GAKQ.ED | |
Retrocopy | GAKQSED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 12 .89 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 14 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .95 RPM |
SRP007412_heart | 0 .24 RPM | 18 .37 RPM |
SRP007412_kidney | 0 .00 RPM | 12 .56 RPM |
SRP007412_liver | 0 .00 RPM | 8 .27 RPM |
SRP007412_testis | 0 .11 RPM | 26 .54 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008547 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000035450 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012674 | 1 retrocopy | |
Homo sapiens | ENSG00000171865 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000034822 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000003610 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014475 | 2 retrocopies |
retro_mmul_544, retro_mmul_799 ,
|
Monodelphis domestica | ENSMODG00000014491 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015400 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000025873 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011614 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002070 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013051 | 1 retrocopy |