RetrogeneDB ID:

retro_ggor_2338

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:6:47630410..47631531(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ACTG1
Ensembl ID:ENSGGOG00000014043
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2338
ATGGAAGAAGAGATCCCTGCACTCTTCATTGACAATGGCTCCGGCATGTGAAAAGCGGCTTTGCTGGGACAATGCCCTCC
GAGCCATGTTCCCCTCTGTCATCGGGCACCCCCGGCACCAGGGCGTGATGGTGGGCATGGGCCAGAAGGACTCCTACGTG
GGCGACCAGGCCCAGAGCAAGTGCGGCATCCTGCCCCTGAAGTACCCCATCAAGCATGGCATCGTCACAAACTGGGACGA
CATGGAGAAGATCTGGCACCATGTTTTCTACAACGAGCTGTGCGTGGCTATGGAGGAGCAGGTGGTGCTACTGACCGAGG
CCCCGCTAAATCCCAGGGCCAATAGGGAGAAGATGACTCAGATCATGTTTAAGACCTTCAACACCCAGGCCATGTACATG
GCCATTCAGGCCGTGCTGACCCTCCACAGCTCTGGTTGCACCACTGGCATTGTCATGGACTCTGGAGATGGGGTCACCCA
CACAGTGCTCATCTACGAGGGCCACACCCTCCCTCACACCGTCTTGCATCTGGACCTGGCTGGCCGGGACCTTACTGACT
ACCTCATGAAGATCCCTACCTAGTGCGGCTATAGCTTCAACACCATGGCCAAGTGGAAGATCGTGCGCAACATCAAGGAG
AAGCTATGCTATGTCGCCCTGGACTTCGAGTAGGAGATGGCCACTGCTGTATCCTCTTCCTCCCTGGAGAAGAGCTACGA
GCTGCCTGACAGCCAGGCCATCATTATTAGCAATGAGTGGTTCTCGTGTCCGAGGCAGTGTTCCAGCCTTCCTTCCTGGG
CATGGAATCCTGTGGCATCCATGAAAGTACCTTCAACTCCATCATGAAGTGTGACATGGACATCCCCAAAGACCTGTACG
CCAACACAGTGCTGTCTGGCGTCACCACCTTGTACCCTGGCATCCCCAATAGGATGCAGAAGGAGATCACTGCCCTGGCA
TCCAGCACCATGAAGATCAAGATATCGTGCCCCCAGAGTGCAAGTACTTTGTGTGGATCGGTGGCTCCATCCTGGCCTCA
CTGTCCACCTTCCAGCAGATGTGGATTAGCAAGCAGGAGTACAACGAGTCGGGCCCCTCCATCATCCACCGCAAATGCTT
C

ORF - retro_ggor_2338 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.32 %
Parental protein coverage: 100. %
Number of stop codons detected: 3
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalMEEEIAALVIDNGSGMCKA-GFAG-DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK
MEEEI.AL.IDNGSGM.KA.GFAG.D.A.RA.FPS..G.PRHQGVMVGMGQKDSYVGD.AQSK.GIL.LK
RetrocopyMEEEIPALFIDNGSGM*KA<GFAG<DNALRAMFPSVIGHPRHQGVMVGMGQKDSYVGDQAQSKCGILPLK
ParentalYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA
YPI.HGIVTNWDDMEKIWHH.FYNEL.VA.EE..VLLTEAPLNP.ANREKMTQIMF.TFNT.AMY.AIQA
RetrocopyYPIKHGIVTNWDDMEKIWHHVFYNELCVAMEEQVVLLTEAPLNPRANREKMTQIMFKTFNTQAMYMAIQA
ParentalVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI
VL.L..SG.TTGIVMDSGDGVTHTV.IYEG..LPH..L.LDLAGRDLTDYLMKI.T..GYSF.T.A...I
RetrocopyVLTLHSSGCTTGIVMDSGDGVTHTVLIYEGHTLPHTVLHLDLAGRDLTDYLMKIPT*CGYSFNTMAKWKI
ParentalVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP-EALFQPSFLGMESCGIHET
VR.IKEKLCYVALDFE.EMATA.SSSSLEKSYELPD.Q.I.I.NE.F.CP.EA.FQPSFLGMESCGIHE.
RetrocopyVRNIKEKLCYVALDFE*EMATAVSSSSLEKSYELPDSQAIIISNEWFSCP<EAVFQPSFLGMESCGIHES
ParentalTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI-IAPPERKYSVWIGGSIL
TFNSIMKCD.DI.KDLYANTVLSG.TT.YPGI..RMQKEITALA.STMKIKI.I.PPE.KY.VWIGGSIL
RetrocopyTFNSIMKCDMDIPKDLYANTVLSGVTTLYPGIPNRMQKEITALASSTMKIKI<IVPPECKYFVWIGGSIL
ParentalASLSTFQQMWISKQEYDESGPSIVHRKCF
ASLSTFQQMWISKQEY.ESGPSI.HRKCF
RetrocopyASLSTFQQMWISKQEYNESGPSIIHRKCF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 672 .84 RPM
SRP007412_cerebellum 0 .00 RPM 420 .65 RPM
SRP007412_heart 0 .00 RPM 127 .52 RPM
SRP007412_kidney 0 .00 RPM 875 .19 RPM
SRP007412_liver 0 .00 RPM 477 .05 RPM
SRP007412_testis 0 .00 RPM 698 .57 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2338 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2338 has 3 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_3466
Pan troglodytes retro_ptro_2349
Pongo abelii retro_pabe_2862

Parental genes homology:
Parental genes homology involve 25 parental genes, and 83 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000152383 retrocopies
Ailuropoda melanoleuca ENSAMEG000000160151 retrocopy
Callithrix jacchus ENSCJAG000000028853 retrocopies
Cavia porcellus ENSCPOG000000121011 retrocopy
Equus caballus ENSECAG000000186001 retrocopy
Felis catus ENSFCAG000000264342 retrocopies
Homo sapiens ENSG0000018400910 retrocopies
Gallus gallus ENSGALG000000287491 retrocopy
Gorilla gorilla ENSGGOG0000000113318 retrocopies
Gorilla gorilla ENSGGOG00000014043 6 retrocopies
Loxodonta africana ENSLAFG000000091671 retrocopy
Monodelphis domestica ENSMODG000000026473 retrocopies
Mustela putorius furoENSMPUG000000116101 retrocopy
Mus musculus ENSMUSG000000628257 retrocopies
Nomascus leucogenys ENSNLEG000000155063 retrocopies
Oryctolagus cuniculus ENSOCUG000000058671 retrocopy
Petromyzon marinus ENSPMAG000000041611 retrocopy
Pongo abelii ENSPPYG0000000873511 retrocopies
Pelodiscus sinensis ENSPSIG000000021022 retrocopies
Rattus norvegicus ENSRNOG000000367011 retrocopy
Sorex araneus ENSSARG000000121971 retrocopy
Sus scrofa ENSSSCG000000283551 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000068682 retrocopies
Tupaia belangeri ENSTBEG000000107811 retrocopy
Xenopus tropicalis ENSXETG000000251161 retrocopy



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