RetrogeneDB ID: | retro_ggor_2338 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 6:47630410..47631531(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTG1 | ||
Ensembl ID: | ENSGGOG00000014043 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.32 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MEEEIAALVIDNGSGMCKA-GFAG-DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK |
MEEEI.AL.IDNGSGM.KA.GFAG.D.A.RA.FPS..G.PRHQGVMVGMGQKDSYVGD.AQSK.GIL.LK | |
Retrocopy | MEEEIPALFIDNGSGM*KA<GFAG<DNALRAMFPSVIGHPRHQGVMVGMGQKDSYVGDQAQSKCGILPLK |
Parental | YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA |
YPI.HGIVTNWDDMEKIWHH.FYNEL.VA.EE..VLLTEAPLNP.ANREKMTQIMF.TFNT.AMY.AIQA | |
Retrocopy | YPIKHGIVTNWDDMEKIWHHVFYNELCVAMEEQVVLLTEAPLNPRANREKMTQIMFKTFNTQAMYMAIQA |
Parental | VLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI |
VL.L..SG.TTGIVMDSGDGVTHTV.IYEG..LPH..L.LDLAGRDLTDYLMKI.T..GYSF.T.A...I | |
Retrocopy | VLTLHSSGCTTGIVMDSGDGVTHTVLIYEGHTLPHTVLHLDLAGRDLTDYLMKIPT*CGYSFNTMAKWKI |
Parental | VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP-EALFQPSFLGMESCGIHET |
VR.IKEKLCYVALDFE.EMATA.SSSSLEKSYELPD.Q.I.I.NE.F.CP.EA.FQPSFLGMESCGIHE. | |
Retrocopy | VRNIKEKLCYVALDFE*EMATAVSSSSLEKSYELPDSQAIIISNEWFSCP<EAVFQPSFLGMESCGIHES |
Parental | TFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI-IAPPERKYSVWIGGSIL |
TFNSIMKCD.DI.KDLYANTVLSG.TT.YPGI..RMQKEITALA.STMKIKI.I.PPE.KY.VWIGGSIL | |
Retrocopy | TFNSIMKCDMDIPKDLYANTVLSGVTTLYPGIPNRMQKEITALASSTMKIKI<IVPPECKYFVWIGGSIL |
Parental | ASLSTFQQMWISKQEYDESGPSIVHRKCF |
ASLSTFQQMWISKQEY.ESGPSI.HRKCF | |
Retrocopy | ASLSTFQQMWISKQEYNESGPSIIHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 672 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 420 .65 RPM |
SRP007412_heart | 0 .00 RPM | 127 .52 RPM |
SRP007412_kidney | 0 .00 RPM | 875 .19 RPM |
SRP007412_liver | 0 .00 RPM | 477 .05 RPM |
SRP007412_testis | 0 .00 RPM | 698 .57 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3466 |
Pan troglodytes | retro_ptro_2349 |
Pongo abelii | retro_pabe_2862 |