RetrogeneDB ID: | retro_ggor_1266 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 16:39758418..39758984(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSGGOG00000001133 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.44 % |
Parental protein coverage: | 50.66 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER |
LT.YLMKILT..GYSFT.TAE.EIVRDIKEKLCYV..D..QE.ATA..S..LEKSYE.PDGQVITI..E. | |
Retrocopy | LTNYLMKILTKCGYSFTPTAEWEIVRDIKEKLCYVTPDIKQELATAVFSF-LEKSYEPPDGQVITICSEW |
Parental | FRCPEALFQPSFLGMESC-GIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPS |
..CPEA.FQ.SFLGME...GIH.TTF.SI.KCDVDI.K.L.A...LS.GTT.Y..I..RMQ.EIT.LAPS | |
Retrocopy | VWCPEATFQLSFLGMEPT<GIHKTTFSSIVKCDVDIHKYL*AKMMLSCGTTVYLDITGRMQ-EITTLAPS |
Parental | TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |
TMKI.II..PE.KY.VWIGGSILASLSTFQ.MWISKQEY.ESGPSI.H.KCF | |
Retrocopy | TMKITIIESPEHKYMVWIGGSILASLSTFQRMWISKQEYEESGPSIIHCKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1553 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 976 .01 RPM |
SRP007412_heart | 0 .00 RPM | 356 .23 RPM |
SRP007412_kidney | 0 .00 RPM | 1454 .29 RPM |
SRP007412_liver | 0 .00 RPM | 1317 .16 RPM |
SRP007412_testis | 0 .10 RPM | 692 .36 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1689 |
Pan troglodytes | retro_ptro_1143 |
Pongo abelii | retro_pabe_1391 |