Parental gene:

ACTG1, ENSOCUG00000005867

Aliases:None
Description:actin, gamma 1 [Source:HGNC Symbol;Acc:144]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018878:124868..127236(-)


>ENSOCUG00000005867
GCTGATGCACGAGCTGCCCGCTTCGCGGGCGACGATGCCCCCCGGGCCGTCTTCCCCTCCCTTGTGGGGCGTCCGCGGCA
CCAGGGCGTGATGGTGGGCATGGGCCAGAAGGACTCGTACGTGGGCGACGAGGCCCAGAGCAAGCGTGGCATCCTGACGC
TCAAGTACCCGATCGAGCACGGCATCGTGACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAG
CTGCGCGTGGCGCCCGAGGAGCACCCGGTGCTGCTGACCGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGAC
CCAGATCATGTTCGAGACGTTCAACACGCCGGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTGTACGCCTCTGGCC
GCACCACGGGCATCGTGATGGACTCCGGTGACGGGGTCACCCACACGGTGCCCATCTACGAGGGCTACGCGCTGCCGCAC
GCCATCCTGCGTCTGGACCTGGCCGGCCGGGACCTGACCGACTACCTCATGAAGATCCTCACGGAGCGCGGCTACAGCTT
CACCACCACGGCCGAGCGCGAGATCGTGCGGGACATCAAGGAGAAGCTGTGCTACGTGGCGCTGGACTTCGAGCAGGAGA
TGGCCACGGCCGCGTCCTCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCCGACGGCCAGGTCATCACCATCGGCAACGAG
CGCTTCCGTTGCCCCGAGGCGCTGTTCCAGCCCTCCTTCCTGGGCATGGAGTCGTGTGGCATCCACGAGACCACCTTCAA
CTCGATCATGAAGTGCGACGTGGACATCCGCAAGGACCTGTACGCCAACACGGTGCTGTCGGGCGGCACCACCATGTACC
CCGGCATCGCCGACCGCATGCAGAAGGAGATCACCGCCCTGGCGCCCAGCACCATGAAGATCAAGATCATCGCGCCCCCG
GAGCGCAAGTACTCG

Library Parental gene expression (RPM)
SRP017611_liver 475 .55 RPM
SRP017611_kidney 804 .57 RPM
SRP017611_brain 1055 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015238 possible_ortholog 3 retrogenes
retro_acar_176, retro_acar_199, retro_acar_7,
Ailuropoda melanoleuca ENSAMEG00000016015 possible_ortholog 1 retrogene
retro_amel_929,
Callithrix jacchus ENSCJAG00000002885 possible_ortholog 3 retrogenes
retro_cjac_139, retro_cjac_336, retro_cjac_377,
Felis catus ENSFCAG00000026434 possible_ortholog 2 retrogenes
retro_fcat_257, retro_fcat_377,
Gorilla gorilla ENSGGOG00000014043 possible_ortholog 6 retrogenes
retro_ggor_1495, retro_ggor_2338, retro_ggor_2449, retro_ggor_273, retro_ggor_413, retro_ggor_520,
Loxodonta africana ENSLAFG00000009167 possible_ortholog 1 retrogene
retro_lafr_116,
Macropus eugenii ENSMEUG00000016247 possible_ortholog 57 retrogenes
retro_meug_1006, retro_meug_1010, retro_meug_1018, retro_meug_1042, retro_meug_105, retro_meug_1085, retro_meug_1147, retro_meug_1186, retro_meug_1200, retro_meug_1230, retro_meug_1237, retro_meug_1380, retro_meug_1414, retro_meug_1437, retro_meug_1529, retro_meug_1534, retro_meug_1557, retro_meug_1588, retro_meug_1613, retro_meug_1624, retro_meug_1654, retro_meug_1656, retro_meug_1664, retro_meug_1669, retro_meug_1708, retro_meug_1716, retro_meug_1723, retro_meug_1753, retro_meug_1763, retro_meug_18, retro_meug_1935, retro_meug_1969, retro_meug_197, retro_meug_1982, retro_meug_1991, retro_meug_2100, retro_meug_2176, retro_meug_218, retro_meug_270, retro_meug_333, retro_meug_370, retro_meug_379, retro_meug_468, retro_meug_506, retro_meug_556, retro_meug_574, retro_meug_581, retro_meug_61, retro_meug_735, retro_meug_790, retro_meug_833, retro_meug_90, retro_meug_900, retro_meug_915, retro_meug_924, retro_meug_925, retro_meug_959,
Monodelphis domestica ENSMODG00000002647 possible_ortholog 3 retrogenes
retro_mdom_187, retro_mdom_59, retro_mdom_89,
Mustela putorius furo ENSMPUG00000011610 possible_ortholog 1 retrogene
retro_mputfur_279,
Nomascus leucogenys ENSNLEG00000013385 possible_ortholog 15 retrogenes
retro_nleu_1008, retro_nleu_1058, retro_nleu_1059, retro_nleu_1150, retro_nleu_1347, retro_nleu_1474, retro_nleu_1729, retro_nleu_2193, retro_nleu_2393, retro_nleu_2574, retro_nleu_2669, retro_nleu_3032, retro_nleu_344, retro_nleu_813, retro_nleu_974,
Nomascus leucogenys ENSNLEG00000015506 ortholog_one2one 3 retrogenes
retro_nleu_1525, retro_nleu_1536, retro_nleu_1930,
Oryctolagus cuniculus ENSOCUG00000004074 other_paralog 1 retrogene
retro_ocun_38,
Oryctolagus cuniculus ENSOCUG00000008193 within_species_paralog 3 retrogenes
retro_ocun_1306, retro_ocun_1421, retro_ocun_919,
Petromyzon marinus ENSPMAG00000004161 possible_ortholog 1 retrogene
retro_pmar_4,
Rattus norvegicus ENSRNOG00000036701 possible_ortholog 1 retrogene
retro_rnor_715,
Ictidomys tridecemlineatus ENSSTOG00000006868 possible_ortholog 2 retrogenes
retro_itri_1675, retro_itri_531,
Xenopus tropicalis ENSXETG00000025116 possible_ortholog 1 retrogene
retro_xtro_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_720 55.40 84.62
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Download FASTA sequences of all ENSOCUG00000005867 retrocopies