RetrogeneDB ID: | retro_ggor_3002 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:47032367..47033071(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSGGOG00000001133 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.78 % |
Parental protein coverage: | 62.33 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR |
S.YASG.TTGIVMDS.DG.THT.PIYEGY.LPHAIL.LDLAG.DLTDY.MKIL.E.GYSFTTTAEREI.. | |
Retrocopy | SWYASGSTTGIVMDSSDGITHTMPIYEGYTLPHAILPLDLAGQDLTDYFMKILKEGGYSFTTTAEREIML |
Parental | DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEA-LFQPSFLGMESCGIHETTF |
DIKEKLCY..LDFEQEMATAASSSSLEKS.EL..GQVITI.N..F.CP...LFQPSFLGMES.GIHETTF | |
Retrocopy | DIKEKLCYITLDFEQEMATAASSSSLEKS*ELLNGQVITISN*WFHCPST<LFQPSFLGMESYGIHETTF |
Parental | NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL |
.SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT.L..ST.KIKIIAPP..KYSV...GSILASL | |
Retrocopy | TSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITVLTSSTIKIKIIAPPVHKYSVCFDGSILASL |
Parental | STFQQMWISKQEYDESGPSIVHRKCF |
ST.QQMWISKQ.Y.E.GP.I.H.KCF | |
Retrocopy | STSQQMWISKQKYQEAGPFITHSKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 1553 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 976 .01 RPM |
SRP007412_heart | 0 .00 RPM | 356 .23 RPM |
SRP007412_kidney | 0 .00 RPM | 1454 .29 RPM |
SRP007412_liver | 0 .00 RPM | 1317 .16 RPM |
SRP007412_testis | 0 .00 RPM | 692 .36 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4818 |
Pan troglodytes | retro_ptro_3207 |
Pongo abelii | retro_pabe_3746 |