RetrogeneDB ID: | retro_acar_7 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343721.1:262912..264040(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000025900 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTG1 | ||
Ensembl ID: | ENSACAG00000015238 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.56 % |
Parental protein coverage: | 87.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK |
.KD.YVG.EAQSKR.ILTL.YP.E.G.VTNWDDMEKIWHHTFY.EL.V.PE.HPVLLTEA.LN.KA.REK | |
Retrocopy | EKDVYVGTEAQSKRDILTLTYPVERGFVTNWDDMEKIWHHTFYKELQVEPEKHPVLLTEALLNYKAKREK |
Parental | MTQIMFETFNTPAMYVAIQAVLSLYASG-TTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY |
MTQIMFETFNTPAMYVAIQAVLSLYAS..TTG.V..........VPI..G..L.....R....G.DLTDY | |
Retrocopy | MTQIMFETFNTPAMYVAIQAVLSLYASSRTTGLVLNIRNDYGEIVPIHDGRVLQRSLIRFFMCGQDLTDY |
Parental | LMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP |
L.KILTERGYSFTT.A.RE.VRDIKEKLCYVALDFEQEMATAASSSSLEKSYE.PDG.VITIG.ERF.CP | |
Retrocopy | LLKILTERGYSFTTPARREVVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEMPDGKVITIGKERFQCP |
Parental | EALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIK |
EALFQP...G.ES.G.HE.......KCD.D....LY.NTVL.GG.TM.PG.A.RM..E.TALAP...KI. | |
Retrocopy | EALFQPCLMGQESGGTHEALWHTLWKCDKDLHPYLYTNTVLAGGSTMFPGFAERMHSEMTALAPKNTKIN |
Parental | IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |
I..PPE.K.SVWIGGS.LASLSTF..M.ISK.EY.E.GPSIV.RKCF | |
Retrocopy | IVDPPEHKNSVWIGGSRLASLSTFRDMCISKEEYNEVGPSIVQRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .43 RPM | 2616 .14 RPM |
SRP009831_brain | 0 .33 RPM | 1706 .37 RPM |
SRP009831_dewlap | 0 .04 RPM | 2044 .29 RPM |
SRP009831_embryo | 0 .62 RPM | 3431 .76 RPM |
SRP009831_heart | 2 .33 RPM | 891 .39 RPM |
SRP009831_liver | 1 .64 RPM | 1343 .35 RPM |
SRP009831_lung | 2 .17 RPM | 1634 .50 RPM |
SRP009831_ovary | 0 .00 RPM | 1631 .70 RPM |
SRP009831_skeletal_muscle | 1 .20 RPM | 188 .12 RPM |