RetrogeneDB ID: | retro_acar_199 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343721.1:270326..271448(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000015163 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTG1 | ||
Ensembl ID: | ENSACAG00000015238 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.4 % |
Parental protein coverage: | 99.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI |
..EIAALV.DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI | |
Retrocopy | DDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI |
Parental | EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS |
EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS | |
Retrocopy | EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS |
Parental | LYASG-TTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD |
LYASG.TTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD | |
Retrocopy | LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD |
Parental | IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNS |
IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEA.FQPSFLGMESCGIHETTFNS | |
Retrocopy | IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEAVFQPSFLGMESCGIHETTFNS |
Parental | IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST |
IMKCDVDIRKDLYANTVLSGG.TMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST | |
Retrocopy | IMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST |
Parental | FQQMWISKQEYDESGPSIVHRKCF |
FQQMWISKQEYDESGPSIVHRKCF | |
Retrocopy | FQQMWISKQEYDESGPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 80 .94 RPM | 2616 .14 RPM |
SRP009831_brain | 1 .23 RPM | 1706 .37 RPM |
SRP009831_dewlap | 148 .67 RPM | 2044 .29 RPM |
SRP009831_embryo | 727 .53 RPM | 3431 .76 RPM |
SRP009831_heart | 4 .25 RPM | 891 .39 RPM |
SRP009831_liver | 45 .77 RPM | 1343 .35 RPM |
SRP009831_lung | 10 .63 RPM | 1634 .50 RPM |
SRP009831_ovary | 222 .15 RPM | 1631 .70 RPM |
SRP009831_skeletal_muscle | 1 .27 RPM | 188 .12 RPM |