RetrogeneDB ID: | retro_hsap_1127 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 12:64836334..64836617(-) | ||
Located in intron of: | ENSG00000184575 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000255566 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS25 | ||
Ensembl ID: | ENSG00000131368 | ||
Aliases: | MRPS25, MRP-S25, RPMS25 | ||
Description: | mitochondrial ribosomal protein S25 [Source:HGNC Symbol;Acc:14511] |
Percent Identity: | 66.33 % |
Parental protein coverage: | 55.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | PWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLRE-EEEEKKQLSHPAN |
PW.QIMMFKN..P.PFL.FYL...EQVLVD.E.K.NKEIMEHI.KI.GKNE.T..E.E.E.KKQLSHPA. | |
Retrocopy | PWMQIMMFKNTIPLPFLQFYLYYEEQVLVDIEIKMNKEIMEHIKKIVGKNEDTRKE<EQE-KKQLSHPAH |
Parental | FG-PRKYCLRECICEVEGQVPCPSLVPL |
FG.P.K....E..CEV.GQVP.P.L..L | |
Retrocopy | FG<PSK*F*WESTCEVKGQVPYPGLMAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 32 .86 RPM |
bodymap2_adrenal | 0 .16 RPM | 49 .99 RPM |
bodymap2_brain | 0 .21 RPM | 49 .36 RPM |
bodymap2_breast | 0 .02 RPM | 44 .44 RPM |
bodymap2_colon | 0 .02 RPM | 46 .89 RPM |
bodymap2_heart | 0 .02 RPM | 66 .72 RPM |
bodymap2_kidney | 0 .00 RPM | 73 .75 RPM |
bodymap2_liver | 0 .02 RPM | 32 .78 RPM |
bodymap2_lung | 0 .00 RPM | 35 .00 RPM |
bodymap2_lymph_node | 0 .00 RPM | 61 .36 RPM |
bodymap2_ovary | 0 .66 RPM | 55 .09 RPM |
bodymap2_prostate | 0 .00 RPM | 52 .79 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 45 .16 RPM |
bodymap2_testis | 0 .00 RPM | 65 .18 RPM |
bodymap2_thyroid | 0 .00 RPM | 72 .73 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 35 .69 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_678 |
Gorilla gorilla | retro_ggor_880 |
Pongo abelii | retro_pabe_932 |
Macaca mulatta | retro_mmul_874 |
Callithrix jacchus | retro_cjac_3303 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017160 | 1 retrocopy | |
Homo sapiens | ENSG00000131368 | 1 retrocopy |
retro_hsap_1127 ,
|
Gorilla gorilla | ENSGGOG00000011005 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000009006 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005157 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005218 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013409 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000008882 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014658 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010912 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027997 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .28 RPM |
CEU_NA11843 | 0 .14 RPM |
CEU_NA11930 | 0 .39 RPM |
CEU_NA12004 | 0 .08 RPM |
CEU_NA12400 | 0 .07 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .28 RPM |
CEU_NA12872 | 0 .05 RPM |
CEU_NA12873 | 0 .13 RPM |
FIN_HG00183 | 0 .38 RPM |
FIN_HG00277 | 0 .37 RPM |
FIN_HG00315 | 0 .33 RPM |
FIN_HG00321 | 0 .21 RPM |
FIN_HG00328 | 0 .24 RPM |
FIN_HG00338 | 0 .13 RPM |
FIN_HG00349 | 0 .09 RPM |
FIN_HG00375 | 0 .20 RPM |
FIN_HG00377 | 0 .10 RPM |
FIN_HG00378 | 0 .11 RPM |
GBR_HG00099 | 0 .12 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .32 RPM |
GBR_HG00119 | 0 .19 RPM |
GBR_HG00131 | 0 .29 RPM |
GBR_HG00133 | 0 .10 RPM |
GBR_HG00134 | 0 .28 RPM |
GBR_HG00137 | 0 .27 RPM |
GBR_HG00142 | 0 .06 RPM |
GBR_HG00143 | 0 .16 RPM |
TSI_NA20512 | 0 .06 RPM |
TSI_NA20513 | 0 .34 RPM |
TSI_NA20518 | 0 .08 RPM |
TSI_NA20532 | 0 .41 RPM |
TSI_NA20538 | 0 .14 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .31 RPM |
TSI_NA20771 | 0 .09 RPM |
TSI_NA20786 | 0 .08 RPM |
TSI_NA20798 | 0 .12 RPM |
YRI_NA18870 | 0 .14 RPM |
YRI_NA18907 | 0 .10 RPM |
YRI_NA18916 | 0 .13 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .13 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .15 RPM |
YRI_NA19213 | 0 .10 RPM |
YRI_NA19214 | 0 .17 RPM |
YRI_NA19223 | 0 .18 RPM |