RetrogeneDB ID: | retro_nleu_184 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397261.1:48504958..48505288(+) | ||
Located in intron of: | ENSNLEG00000017052 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS25 | ||
Ensembl ID: | ENSNLEG00000005218 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.3 % |
Parental protein coverage: | 77.62 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | PWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLRE-EEEKKQLSHPANF |
PW.QIMMFKN..P.PFL.FYL...EQVLVD.E.K.NKEIMEHI.KI.GKNE.T..E.E.EKKQLSHPA.F | |
Retrocopy | PWMQIMMFKNTIPLPFLQFYLYYEEQVLVDIEIKMNKEIMEHIKKIVGKNEDTRKE<EQEKKQLSHPAHF |
Parental | G-PRKYCLRECICEVEGQVPCPS-LVPLPKEMRGKYKAALKASA |
G.P.K....E..CEV.GQVP.P..LV.LPKE..GKYKA.LKASA | |
Retrocopy | G<PSK*F*WESTCEVKGQVPYPG<LVALPKEKTGKYKATLKASA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017160 | 1 retrocopy | |
Homo sapiens | ENSG00000131368 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011005 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000009006 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005157 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005218 | 1 retrocopy |
retro_nleu_184 ,
|
Pongo abelii | ENSPPYG00000013409 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000008882 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014658 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010912 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027997 | 1 retrocopy |