RetrogeneDB ID: | retro_hsap_1304 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 14:21631239..21631901(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000259102 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SMARCE1 | ||
Ensembl ID: | ENSG00000073584 | ||
Aliases: | SMARCE1, BAF57 | ||
Description: | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:HGNC Symbol;Acc:11109] |
Percent Identity: | 84.3 % |
Parental protein coverage: | 54.01 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRK |
KHTATA.FQRNH.LI.EILS.SVVPD..S.VTTARMQVLK.QVQSLMVHQ.KLEAELLQIEER...K.RK | |
Retrocopy | KHTATACFQRNHSLINEILSDSVVPDIQSAVTTARMQVLKQQVQSLMVHQQKLEAELLQIEERYP-KTRK |
Parental | FLESTDSFNNELK-RLCGLKVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQAERSQSSIVPEEEQAAN |
FLEST.SF.N.LK..LCGLKVEVDMEKIAAEIAQAEEQ..KRQEERE.E.A.QA.RSQS.IVPE.E.AAN | |
Retrocopy | FLESTESFSNNLK<SLCGLKVEVDMEKIAAEIAQAEEQTHKRQEEREREVADQAKRSQSGIVPEQEHAAN |
Parental | KGEEKKDDENIPMETEETHLEETTESQQNGEEGTSTPEDKESGQEGVDSMAEEGTSDSNTGSESNSATVE |
.GEEKKDDENIPMET.ETHLEE.TESQQN.EEGTSTP.DKESGQEG.DSMAEEGTSDSNTGSESNS.TVE | |
Retrocopy | *GEEKKDDENIPMETGETHLEEMTESQQNSEEGTSTP*DKESGQEGIDSMAEEGTSDSNTGSESNSPTVE |
Parental | EPPTDPIPEDEKK |
E.PTDPIPEDEKK | |
Retrocopy | ESPTDPIPEDEKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 56 .08 RPM |
bodymap2_adrenal | 0 .00 RPM | 94 .61 RPM |
bodymap2_brain | 0 .00 RPM | 46 .83 RPM |
bodymap2_breast | 0 .00 RPM | 71 .79 RPM |
bodymap2_colon | 0 .00 RPM | 76 .98 RPM |
bodymap2_heart | 0 .00 RPM | 35 .19 RPM |
bodymap2_kidney | 0 .02 RPM | 63 .37 RPM |
bodymap2_liver | 0 .00 RPM | 26 .45 RPM |
bodymap2_lung | 0 .00 RPM | 43 .13 RPM |
bodymap2_lymph_node | 0 .00 RPM | 65 .71 RPM |
bodymap2_ovary | 0 .00 RPM | 110 .88 RPM |
bodymap2_prostate | 0 .00 RPM | 90 .20 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 32 .34 RPM |
bodymap2_testis | 0 .00 RPM | 73 .21 RPM |
bodymap2_thyroid | 0 .00 RPM | 79 .05 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 71 .60 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_894 |
Gorilla gorilla | retro_ggor_1020 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000013573 | 4 retrocopies | |
Homo sapiens | ENSG00000073584 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000011803 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000009821 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000004609 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004005 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000014660 | 4 retrocopies | |
Mus musculus | ENSMUSG00000037935 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001957 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008981 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001652 | 7 retrocopies | |
Ochotona princeps | ENSOPRG00000000985 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008456 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000022902 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000011355 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010676 | 7 retrocopies | |
Tupaia belangeri | ENSTBEG00000000770 | 10 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .05 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |