Parental gene: | Smarce1, ENSRNOG00000010676 |
| Aliases: | Smarce1, BAF57, RGD1304726 |
| Description: | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 [Source:RefSeq peptide;Acc:NP_001020164] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 10:86913922..86933996(-) |
>ENSRNOG00000010676
ATGTCAAAAAGACCATCTTATGCCCCACCTCCCACCCCAGCTCCTGCAACAGCGTCCTCCGGCATTACAATCCCAAAGCC
TCCAAAGCCACCAGATAAGCCGCTCATGCCCTACATGAGGTACAGCAGAAAGGTCTGGGACCAAGTAAAGGCTTCCAACC
CTGACCTAAAGTTGTGGGAGATTGGCAAGATTATTGGTGGCATGTGGCGAGATCTCACTGATGAAGAGAAACAAGAATAT
TTAAACGAGTACGAAGCAGAAAAGATAGAGTACAATGAATCTATGAAGGCCTATCACAATTCCCCTGCATACCTTGCATA
TATTAATGCAAAAAGTCGTGCGGAAGCTGCATTAGAGGAAGAAAGTCGACAGAGACAGTCGCGCATGGAGAAAGGAGAGC
CTTACATGAGCATTCAGCCTGCGGAGGACCCAGACGATTATGATGACGGCTTTTCAATGAAGCATACAGCCACTGCCCGT
TTCCAGAGAAACCACCGCCTCATCAGTGAGATCCTCAGTGAGAGTGTGGTACCTGATGTGCGGTCGGTTGTCACAACAGC
TAGAATGCAAGTCCTCAAGCGACAGGTCCAGTCTTTAATGGTTCATCAGCGGAAACTAGAAGCCGAGCTTCTTCAGATAG
AGGAACGACACCAGGAAAAGAAGAGGAAATTCCTGGAAAGCACAGACTCCTTTAACAATGAGCTTAAAAGGCTGTGTGGT
CTGAAGGTGGAAGTGGACATGGAGAAGATTGCAGCAGAGATCGCACAGGCGGAGGAGCAGGCCCGCAAAAGGCAGGAGGA
GAGGGAGAAGGAGGCAGCCGAGCAAGCTGAGCGCAGCCAGGGCAGCATCGCCCCCGAGGAAGAGCAAGTGGCGAACAAAG
CCGAGGAGAAGAAGGATGAGGAGAACATCCCGATGGAGACAGAGGAGACACACCTTGAAGACACTGCGGAGAACCAGCAG
AATGGTGAAGAAGGCACATCTACTCCTGAGGACAAGGAGAGTGGGCAGGAGGGGGTTGACAGCATGGAGGTGGAAGGGAC
CAGTGACAGTAACACCGGCTCAGAGAGCAACAGCGCAACGGTGGAGGAGCCGCCCACGGACCCTCCAGAAGCCGAGAAGA
AGGAATAA
ATGTCAAAAAGACCATCTTATGCCCCACCTCCCACCCCAGCTCCTGCAACAGCGTCCTCCGGCATTACAATCCCAAAGCC
TCCAAAGCCACCAGATAAGCCGCTCATGCCCTACATGAGGTACAGCAGAAAGGTCTGGGACCAAGTAAAGGCTTCCAACC
CTGACCTAAAGTTGTGGGAGATTGGCAAGATTATTGGTGGCATGTGGCGAGATCTCACTGATGAAGAGAAACAAGAATAT
TTAAACGAGTACGAAGCAGAAAAGATAGAGTACAATGAATCTATGAAGGCCTATCACAATTCCCCTGCATACCTTGCATA
TATTAATGCAAAAAGTCGTGCGGAAGCTGCATTAGAGGAAGAAAGTCGACAGAGACAGTCGCGCATGGAGAAAGGAGAGC
CTTACATGAGCATTCAGCCTGCGGAGGACCCAGACGATTATGATGACGGCTTTTCAATGAAGCATACAGCCACTGCCCGT
TTCCAGAGAAACCACCGCCTCATCAGTGAGATCCTCAGTGAGAGTGTGGTACCTGATGTGCGGTCGGTTGTCACAACAGC
TAGAATGCAAGTCCTCAAGCGACAGGTCCAGTCTTTAATGGTTCATCAGCGGAAACTAGAAGCCGAGCTTCTTCAGATAG
AGGAACGACACCAGGAAAAGAAGAGGAAATTCCTGGAAAGCACAGACTCCTTTAACAATGAGCTTAAAAGGCTGTGTGGT
CTGAAGGTGGAAGTGGACATGGAGAAGATTGCAGCAGAGATCGCACAGGCGGAGGAGCAGGCCCGCAAAAGGCAGGAGGA
GAGGGAGAAGGAGGCAGCCGAGCAAGCTGAGCGCAGCCAGGGCAGCATCGCCCCCGAGGAAGAGCAAGTGGCGAACAAAG
CCGAGGAGAAGAAGGATGAGGAGAACATCCCGATGGAGACAGAGGAGACACACCTTGAAGACACTGCGGAGAACCAGCAG
AATGGTGAAGAAGGCACATCTACTCCTGAGGACAAGGAGAGTGGGCAGGAGGGGGTTGACAGCATGGAGGTGGAAGGGAC
CAGTGACAGTAACACCGGCTCAGAGAGCAACAGCGCAACGGTGGAGGAGCCGCCCACGGACCCTCCAGAAGCCGAGAAGA
AGGAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 18 .76 RPM |
| SRP017611_kidney | 37 .26 RPM |
| SRP017611_brain | 33 .29 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000016025 | possible_ortholog | 8 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000008727 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000013573 | ortholog_one2many | 4 retrogenes | |
| Felis catus | ENSFCAG00000009646 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000073584 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000011803 | ortholog_one2many | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000009821 | ortholog_one2one | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000004609 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000004005 | ortholog_one2many | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014660 | possible_ortholog | 4 retrogenes | |
| Mus musculus | ENSMUSG00000037935 | ortholog_one2one | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000001957 | ortholog_one2one | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000008981 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000001652 | ortholog_one2one | 7 retrogenes | |
| Ochotona princeps | ENSOPRG00000000985 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008456 | ortholog_one2many | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000022902 | ortholog_one2one | 5 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000011355 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000000770 | ortholog_one2one | 10 retrogenes | |
| Tursiops truncatus | ENSTTRG00000013885 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_1278 | 82.49 | 68.53 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_1311 | 87.28 | 60.53 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_1456 | 94.57 | 97.60 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_1507 | 84.85 | 69.87 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_rnor_1599 | 87.43 | 50.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_rnor_2383 | 63.45 | 51.20 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_rnor_2593 | 84.40 | 66.13 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000010676 retrocopies