Parental gene:

Smarce1, ENSRNOG00000010676

Aliases:Smarce1, BAF57, RGD1304726
Description:SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 [Source:RefSeq peptide;Acc:NP_001020164]
Organism:Rat (Rattus norvegicus)
Coordinates:10:86913922..86933996(-)


>ENSRNOG00000010676
ATGTCAAAAAGACCATCTTATGCCCCACCTCCCACCCCAGCTCCTGCAACAGCGTCCTCCGGCATTACAATCCCAAAGCC
TCCAAAGCCACCAGATAAGCCGCTCATGCCCTACATGAGGTACAGCAGAAAGGTCTGGGACCAAGTAAAGGCTTCCAACC
CTGACCTAAAGTTGTGGGAGATTGGCAAGATTATTGGTGGCATGTGGCGAGATCTCACTGATGAAGAGAAACAAGAATAT
TTAAACGAGTACGAAGCAGAAAAGATAGAGTACAATGAATCTATGAAGGCCTATCACAATTCCCCTGCATACCTTGCATA
TATTAATGCAAAAAGTCGTGCGGAAGCTGCATTAGAGGAAGAAAGTCGACAGAGACAGTCGCGCATGGAGAAAGGAGAGC
CTTACATGAGCATTCAGCCTGCGGAGGACCCAGACGATTATGATGACGGCTTTTCAATGAAGCATACAGCCACTGCCCGT
TTCCAGAGAAACCACCGCCTCATCAGTGAGATCCTCAGTGAGAGTGTGGTACCTGATGTGCGGTCGGTTGTCACAACAGC
TAGAATGCAAGTCCTCAAGCGACAGGTCCAGTCTTTAATGGTTCATCAGCGGAAACTAGAAGCCGAGCTTCTTCAGATAG
AGGAACGACACCAGGAAAAGAAGAGGAAATTCCTGGAAAGCACAGACTCCTTTAACAATGAGCTTAAAAGGCTGTGTGGT
CTGAAGGTGGAAGTGGACATGGAGAAGATTGCAGCAGAGATCGCACAGGCGGAGGAGCAGGCCCGCAAAAGGCAGGAGGA
GAGGGAGAAGGAGGCAGCCGAGCAAGCTGAGCGCAGCCAGGGCAGCATCGCCCCCGAGGAAGAGCAAGTGGCGAACAAAG
CCGAGGAGAAGAAGGATGAGGAGAACATCCCGATGGAGACAGAGGAGACACACCTTGAAGACACTGCGGAGAACCAGCAG
AATGGTGAAGAAGGCACATCTACTCCTGAGGACAAGGAGAGTGGGCAGGAGGGGGTTGACAGCATGGAGGTGGAAGGGAC
CAGTGACAGTAACACCGGCTCAGAGAGCAACAGCGCAACGGTGGAGGAGCCGCCCACGGACCCTCCAGAAGCCGAGAAGA
AGGAATAA

Library Parental gene expression (RPM)
SRP017611_brain 33 .29 RPM
SRP017611_kidney 37 .26 RPM
SRP017611_liver 18 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000016025 possible_ortholog 8 retrogenes
retro_cfam_1057, retro_cfam_1131, retro_cfam_1134, retro_cfam_1300, retro_cfam_1412, retro_cfam_1803, retro_cfam_2063, retro_cfam_2127,
Choloepus hoffmanni ENSCHOG00000008727 possible_ortholog 3 retrogenes
retro_chof_1245, retro_chof_482, retro_chof_573,
Callithrix jacchus ENSCJAG00000013573 ortholog_one2many 4 retrogenes
retro_cjac_1107, retro_cjac_2109, retro_cjac_50, retro_cjac_854,
Felis catus ENSFCAG00000009646 possible_ortholog 2 retrogenes
retro_fcat_234, retro_fcat_513,
Homo sapiens ENSG00000073584 ortholog_one2one 5 retrogenes
retro_hsap_1195, retro_hsap_1304, retro_hsap_3623, retro_hsap_3947, retro_hsap_922,
Gorilla gorilla ENSGGOG00000011803 ortholog_one2many 2 retrogenes
retro_ggor_1020, retro_ggor_931,
Microcebus murinus ENSMICG00000009821 ortholog_one2one 4 retrogenes
retro_mmur_1408, retro_mmur_1592, retro_mmur_608, retro_mmur_928,
Myotis lucifugus ENSMLUG00000004609 ortholog_one2many 1 retrogene
retro_mluc_1209,
Macaca mulatta ENSMMUG00000004005 ortholog_one2many 3 retrogenes
retro_mmul_1284, retro_mmul_2159, retro_mmul_2286,
Mustela putorius furo ENSMPUG00000014660 possible_ortholog 4 retrogenes
retro_mputfur_1411, retro_mputfur_1482, retro_mputfur_1499, retro_mputfur_739,
Mus musculus ENSMUSG00000037935 ortholog_one2one 5 retrogenes
retro_mmus_1111, retro_mmus_1127, retro_mmus_2437, retro_mmus_2618, retro_mmus_3194,
Nomascus leucogenys ENSNLEG00000001957 ortholog_one2one 4 retrogenes
retro_nleu_1060, retro_nleu_2051, retro_nleu_2083, retro_nleu_286,
Oryctolagus cuniculus ENSOCUG00000008981 possible_ortholog 1 retrogene
retro_ocun_59,
Otolemur garnettii ENSOGAG00000001652 ortholog_one2one 7 retrogenes
retro_ogar_1734, retro_ogar_2059, retro_ogar_3199, retro_ogar_402, retro_ogar_454, retro_ogar_682, retro_ogar_760,
Ochotona princeps ENSOPRG00000000985 ortholog_one2one 1 retrogene
retro_opri_731,
Pongo abelii ENSPPYG00000008456 ortholog_one2many 4 retrogenes
retro_pabe_2973, retro_pabe_3251, retro_pabe_794, retro_pabe_994,
Pan troglodytes ENSPTRG00000022902 ortholog_one2one 5 retrogenes
retro_ptro_2451, retro_ptro_2678, retro_ptro_3039, retro_ptro_639, retro_ptro_894,
Pteropus vampyrus ENSPVAG00000011355 ortholog_one2one 1 retrogene
retro_pvam_237,
Tupaia belangeri ENSTBEG00000000770 ortholog_one2one 10 retrogenes
retro_tbel_1246, retro_tbel_1554, retro_tbel_2208, retro_tbel_2955, retro_tbel_4035, retro_tbel_4629, retro_tbel_4656, retro_tbel_658, retro_tbel_821, retro_tbel_844,
Tursiops truncatus ENSTTRG00000013885 possible_ortholog 1 retrogene
retro_ttru_1217,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1278 82.49 68.53
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2. retro_rnor_1311 87.28 60.53
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3. retro_rnor_1456 94.57 97.60
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4. retro_rnor_1507 84.85 69.87
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5. retro_rnor_1599 87.43 50.67
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6. retro_rnor_2383 63.45 51.20
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7. retro_rnor_2593 84.40 66.13
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Download FASTA sequences of all ENSRNOG00000010676 retrocopies