RetrogeneDB ID:

retro_mputfur_739

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896942.1:10668552..10669713(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMPUG00000014660
Aliases:None
Description:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:UniProtKB/TrEMBL;Acc:G9KQ49]


Retrocopy-Parental alignment summary:






>retro_mputfur_739
TCAAAAACACCATCTTATGCCCCACTTCCCATCCTAGCTCCTGCAACACAAATGTCCAGCACACCTGGATTTGTGGGATA
CAGTCCATACAGTCCTCACCCCTACAACAACTGCAGGCTGAGAGGGATCTCAGCCACCGATAGCCAGCTCAACATCCTCT
GGTATTACCATTTCAAAACACCCAAGTCCACCAGATACTCAGCTGATGCCTCACATGAGATACAGCAGAAAGTTCTCGGA
CCAAGTAAAAGGTTCCAACCCTGACCCAAAGGTGTGGGAGTTGGGCCAGATTATTGGTGGCATGTAGCAAGATCTCACCA
ATGAAAAAAAATGAGACTATGTGAATGAATACAAAGCAGAACATAAATCTATGAAGGTCTATTTTAAGTTCCCTGCATAC
TTTCCTTACATAAATGCAAAAAGTCATATAGAAGCTGCTCTGGAGGAAGAAAGTCGACAGAGACAGCCTCGCATGGAGAA
AGGAGAACCATATGTGAGCATTCTGCAGAAGATCCAAATGATGATGATGATGGCTTTCAGCAAATCATACAGTCACTGTC
CATTTCCGGAGACACCAACACCTCATCAGTGAAATCCCCAGGAAGAGTGTGGTGTCAGACTTTTGGTCGGCTGCCACAAC
ACCTAAAAGGCAAGTCCAGTCCTTAATAGCTCAACAGCAAAAACTAGAAGCTGAACTTTTTCAAGCAGAGGAGCAATACC
AGGAAAAGAAGACGAAATTCCTGGAAAGAATAGATTCTTCTAACAATGAACATAGAAGTGGGTGCAGTTTGAAAGTAGAT
GTGGGTTGGAAAAAAATTGCCCCTGAAATTGCACAGACAGAGGAACAGGCTCGAAAAACACAGGAGGAAAGGGAAGACGA
GAGAGATGGCCCAGCAAGTAGAAGGCCGTCAGAGCAGCATGGTTCCTGAGGGAGAGCAAACTGCTAGTAAGATTGCGGAA
CAGAAAGAGCACAAGCGTATCCCAGTGGAGACAGAGGAGGTAGAAGAAGTGACAGAGAGCCAATAGAACACTGAGGAAGG
CACACCTTCTCCCGAAGACAATGAGAGTGGGCAGGAGGGGGTGGACCAGATGGCTGAGGAGGAGCCCAGTGGTAGTAAGG
CTGTCTAAGAGAGCAACAATGGAGGAGCCACCAATGGACCC

ORF - retro_mputfur_739 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 55.69 %
Parental protein coverage: 97.08 %
Number of stop codons detected: 4
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalTERPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYRLGGNPGTNSRV-TASSGITIPKPPKPPDKPL
...PSYAP.P..APATQM.STPGFVGY.PYS...YNN.RL.G...T.S...T.S.GITI.K.P.PPD..L
RetrocopySKTPSYAPLPILAPATQMSSTPGFVGYSPYSPHPYNNCRLRGISATDSQL>TSS-GITISKHPSPPDTQL
ParentalMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYL
MP.MRYSRK..DQVK.SNPD.K.WE.G.IIGGM..DLT......Y.NEY.AE......SMK.Y...PAY.
RetrocopyMPHMRYSRKFSDQVKGSNPDPKVWELGQIIGGM*QDLTNXXX*DYVNEYKAE----HKSMKVYFKFPAYF
ParentalAYINAKSHAEAALEEESRQRQSRMEKGEPYMSI-QPAEDPDDYDDGF-SMKHTATARFQRNHRLISEILS
.YINAKSH.EAALEEESRQRQ.RMEKGEPY.SI.......DD.DDGF.S..HT.T..F.R...LISEI..
RetrocopyPYINAKSHIEAALEEESRQRQPRMEKGEPYVSI<SAEDPNDD-DDGF<SANHTVTVHFRRHQHLISEIPR
ParentalESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKV
.SVV.D..S..TT...QV.....Q..........AE....E.....K..KFLE..DS.NNE....C.LKV
RetrocopyKSVVSDFWSAATTPKRQVQSLIAQQQKLEAELFQAE----EQYQEKK-TKFLERIDSSNNEHRSGCSLKV
ParentalEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQAERSQS-SMVAEE-ERAASKTEEKKDDESVPTETEETH
.V...KIA.EIAQ.EEQARK.QEERE.E....A.R..S.S....E.E..ASK..E.K.....P.ETEE..
RetrocopyDVGWKKIAPEIAQTEEQARKTQEEREDERDGPASRRPS>SSMVPEGEQTASKIAEQKEHKRIPVETEE--
ParentalLEEATESQQNGEEGTSTPEDKESGQEGVDSMAEEGTSDSNTGSESNSATVEEPP
.EE.TESQ.N.EEGT..PED.ESGQEGVD.MAEE..S.S....ESN.......P
RetrocopyVEEVTESQ*NTEEGTPSPEDNESGQEGVDQMAEEEPSGSKAV*ESNNGGATNGP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Mustela putorius furo was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mputfur_739 retrocopy.

TSS - click to see more details

Mustela putorius furo was not studied using FANTOM5 data.

Lab - click to see more details

retro_mputfur_739 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 82 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000160258 retrocopies
retro_cfam_1057, retro_cfam_1131, retro_cfam_1134, retro_cfam_1300, retro_cfam_1412, retro_cfam_1803, retro_cfam_2063, retro_cfam_2127,
Choloepus hoffmanni ENSCHOG000000087273 retrocopies
retro_chof_1245, retro_chof_482, retro_chof_573,
Callithrix jacchus ENSCJAG000000135734 retrocopies
retro_cjac_1107, retro_cjac_2109, retro_cjac_50, retro_cjac_854,
Felis catus ENSFCAG000000096462 retrocopies
retro_fcat_234, retro_fcat_513,
Homo sapiens ENSG000000735845 retrocopies
retro_hsap_1195, retro_hsap_1304, retro_hsap_3623, retro_hsap_3947, retro_hsap_922,
Gorilla gorilla ENSGGOG000000118032 retrocopies
retro_ggor_1020, retro_ggor_931,
Microcebus murinus ENSMICG000000098214 retrocopies
retro_mmur_1408, retro_mmur_1592, retro_mmur_608, retro_mmur_928,
Myotis lucifugus ENSMLUG000000046091 retrocopy
retro_mluc_1209,
Macaca mulatta ENSMMUG000000040053 retrocopies
retro_mmul_1284, retro_mmul_2159, retro_mmul_2286,
Mustela putorius furoENSMPUG00000014660 4 retrocopies
retro_mputfur_1411, retro_mputfur_1482, retro_mputfur_1499, retro_mputfur_739 ,
Mus musculus ENSMUSG000000379355 retrocopies
retro_mmus_1111, retro_mmus_1127, retro_mmus_2437, retro_mmus_2618, retro_mmus_3194,
Nomascus leucogenys ENSNLEG000000019574 retrocopies
retro_nleu_1060, retro_nleu_2051, retro_nleu_2083, retro_nleu_286,
Oryctolagus cuniculus ENSOCUG000000089811 retrocopy
retro_ocun_59,
Otolemur garnettii ENSOGAG000000016527 retrocopies
retro_ogar_1734, retro_ogar_2059, retro_ogar_3199, retro_ogar_402, retro_ogar_454, retro_ogar_682, retro_ogar_760,
Ochotona princeps ENSOPRG000000009851 retrocopy
retro_opri_731,
Pongo abelii ENSPPYG000000084564 retrocopies
retro_pabe_2973, retro_pabe_3251, retro_pabe_794, retro_pabe_994,
Pan troglodytes ENSPTRG000000229025 retrocopies
retro_ptro_2451, retro_ptro_2678, retro_ptro_3039, retro_ptro_639, retro_ptro_894,
Pteropus vampyrus ENSPVAG000000113551 retrocopy
retro_pvam_237,
Rattus norvegicus ENSRNOG000000106767 retrocopies
retro_rnor_1278, retro_rnor_1311, retro_rnor_1456, retro_rnor_1507, retro_rnor_1599, retro_rnor_2383, retro_rnor_2593,
Tupaia belangeri ENSTBEG0000000077010 retrocopies
retro_tbel_1246, retro_tbel_1554, retro_tbel_2208, retro_tbel_2955, retro_tbel_4035, retro_tbel_4629, retro_tbel_4656, retro_tbel_658, retro_tbel_821, retro_tbel_844,
Tursiops truncatus ENSTTRG000000138851 retrocopy
retro_ttru_1217,


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