RetrogeneDB ID: | retro_mmul_2286 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:37527547..37528772(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4855 | ||
Ensembl ID: | ENSMMUG00000004005 | ||
Aliases: | None | ||
Description: | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 [Source:RefSeq peptide;Acc:NP_001248235] |
Percent Identity: | 83.74 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | KRPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYRLGGNPGTNSRVTASSGITIPKPPKPPDKPLMP |
.RPSY.PPPTPAPATQMPSTPGFV.YNPYSHLAYNNYRL.GNP.TNS.VTASSGITIPK.PKPPDKPLMP | |
Retrocopy | ERPSYTPPPTPAPATQMPSTPGFVRYNPYSHLAYNNYRLEGNPDTNSQVTASSGITIPKSPKPPDKPLMP |
Parental | YMRY-SRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLA |
YMRY..RKVW.QVKASNPDLKLWEIGKIIGGMW.DLT..EK.EYLNE..AEKIEYNESMKA.H.SP.YLA | |
Retrocopy | YMRY>GRKVWNQVKASNPDLKLWEIGKIIGGMW*DLTGKEKHEYLNECKAEKIEYNESMKACHKSPRYLA |
Parental | YINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESV |
YINAKS.AEAALEEES.QRQS.MEKGEPYM.I.P.EDPDDYDD.F.MKH.ATA.FQRNHRLISEILSES. | |
Retrocopy | YINAKSCAEAALEEES*QRQSCMEKGEPYMNI*PPEDPDDYDDSFPMKHIATAHFQRNHRLISEILSES- |
Parental | VPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVD |
VPDV.S.VTT.RMQ.LK.QVQSL..HQRKLEAELLQIEE.HQEKKRK.LESTDSFN.ELKRLCGLKVEVD | |
Retrocopy | VPDVWSIVTTVRMQILKWQVQSLIIHQRKLEAELLQIEE*HQEKKRKYLESTDSFNDELKRLCGLKVEVD |
Parental | MEKIAAEIAQAEEQARKRQEEREKEAAEQAERSQSSIVPEEEQAANKGEEKKDD-ENIPMETEETHLEET |
MEKIAAEIAQAEEQ..KR.E.REKE.AEQAE..QSSIVP.E.QAA.KGEEKKDD..NIPMET.E..LEET | |
Retrocopy | MEKIAAEIAQAEEQVHKR*EKREKEVAEQAEHRQSSIVPKEKQAASKGEEKKDD>KNIPMETDEACLEET |
Parental | TESQQNGEEGTSTPEDKESGQEGVDSMAEEGTSDSNTGSESNSATVEEPP-TDPIPEDEKKE |
TESQQN.EEGTST.EDKESGQEGV.SMAEEGTSDSN.G.ESNSA.VEE.P...PIPE..KKE | |
Retrocopy | TESQQNSEEGTSTHEDKESGQEGVHSMAEEGTSDSNIGLESNSAIVEELP<KGPIPEMRKKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .42 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 27 .13 RPM |
SRP007412_cerebellum | 0 .13 RPM | 36 .87 RPM |
SRP007412_heart | 0 .06 RPM | 47 .99 RPM |
SRP007412_kidney | 0 .00 RPM | 59 .86 RPM |
SRP007412_liver | 0 .12 RPM | 20 .78 RPM |
SRP007412_testis | 0 .00 RPM | 56 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3947 |
Pan troglodytes | retro_ptro_2678 |
Pongo abelii | retro_pabe_3251 |