RetrogeneDB ID: | retro_hsap_2013 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 19:54120057..54120506(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000269608 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OSTC | ||
Ensembl ID: | ENSG00000198856 | ||
Aliases: | None | ||
Description: | oligosaccharyltransferase complex subunit (non-catalytic) [Source:HGNC Symbol;Acc:24448] |
Percent Identity: | 89.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | METLYRVPFLVLECPNLKLKKPPWLHMPSAMTVYALVVVSYFLITGGIIYDVIVEPPSVGSMTDEHGHQR |
METLYRVPFL.LECPNLKLKKPPWLHMP.AMT.YALVVVSYFLIT.GI.YDV.VEPP.VGSMTDE.GHQR | |
Retrocopy | METLYRVPFLALECPNLKLKKPPWLHMPLAMTMYALVVVSYFLITRGIVYDVTVEPPGVGSMTDEQGHQR |
Parental | PVAFLAYRVNGQY-IMEGLASSFLFTMGGLGFIILDRSNAPNIPKLNRFLLLFIGFVCVLLS-FFMARVF |
PVAFLAYRV.GQY.IMEGL.SSFLFTMGGLGFIILDRSNAPNIPKLNRFLLLF.GFVCVLLS.FF.ARVF | |
Retrocopy | PVAFLAYRVSGQY>IMEGLGSSFLFTMGGLGFIILDRSNAPNIPKLNRFLLLFVGFVCVLLS>FFTARVF |
Parental | MRMKLPGYLMG |
.RMKLPG.LMG | |
Retrocopy | VRMKLPGSLMG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 38 .62 RPM |
bodymap2_adrenal | 0 .00 RPM | 62 .94 RPM |
bodymap2_brain | 0 .00 RPM | 11 .16 RPM |
bodymap2_breast | 0 .00 RPM | 51 .65 RPM |
bodymap2_colon | 0 .00 RPM | 71 .12 RPM |
bodymap2_heart | 0 .00 RPM | 18 .33 RPM |
bodymap2_kidney | 0 .00 RPM | 90 .52 RPM |
bodymap2_liver | 0 .00 RPM | 106 .95 RPM |
bodymap2_lung | 0 .00 RPM | 55 .70 RPM |
bodymap2_lymph_node | 0 .00 RPM | 74 .28 RPM |
bodymap2_ovary | 0 .00 RPM | 67 .12 RPM |
bodymap2_prostate | 0 .00 RPM | 57 .54 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 7 .31 RPM |
bodymap2_testis | 0 .00 RPM | 62 .23 RPM |
bodymap2_thyroid | 0 .00 RPM | 39 .79 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 63 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1457 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011611 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016002 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011172 | 2 retrocopies | |
Homo sapiens | ENSG00000198856 | 7 retrocopies |
retro_hsap_1746, retro_hsap_2013 , retro_hsap_2972, retro_hsap_3598, retro_hsap_3686, retro_hsap_376, retro_hsap_4246,
|
Gorilla gorilla | ENSGGOG00000026873 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000026381 | 7 retrocopies | |
Myotis lucifugus | ENSMLUG00000000478 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000020599 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011056 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000024222 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003446 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |