RetrogeneDB ID: | retro_ocun_7 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:109316748..109317198(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000010787 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OSTC | ||
Ensembl ID: | ENSOCUG00000011056 | ||
Aliases: | None | ||
Description: | oligosaccharyltransferase complex subunit (non-catalytic) [Source:HGNC Symbol;Acc:24448] |
Percent Identity: | 95.14 % |
Parental protein coverage: | 75.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | METLYRVPFLVLECPNLKLKKPPWVHMPSAMTVYALVVVSYFLITGGIIYDVIVEPPSVGSMTDEHGHQR |
METLYRVPFLVL.CPNLKLKKPPWVHMPSAMTVYALVVVSYFLITGGIIYDVIVEPPSVGSMTDEHGH.R | |
Retrocopy | METLYRVPFLVLKCPNLKLKKPPWVHMPSAMTVYALVVVSYFLITGGIIYDVIVEPPSVGSMTDEHGHHR |
Parental | PVAFLAYRVNGQYIMEGLASSFLFTMGGLGFIILDRSNAPNIPKLNRFLLLFIGFVCVLLSFFMARVFMR |
PVAFLAYRVNGQYIMEGLASSFLFTMG.LGFIIL.RSNAPNIPKLNRFLLLFIGF.CVLL.FFMARVFMR | |
Retrocopy | PVAFLAYRVNGQYIMEGLASSFLFTMGDLGFIILHRSNAPNIPKLNRFLLLFIGFICVLLAFFMARVFMR |
Parental | MKLP |
.KLP | |
Retrocopy | TKLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 6 .24 RPM |
SRP017611_kidney | 0 .30 RPM | 14 .70 RPM |
SRP017611_liver | 0 .08 RPM | 9 .25 RPM |