RetrogeneDB ID: | retro_ocun_1318 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:107026008..107026359(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OSTC | ||
Ensembl ID: | ENSOCUG00000011056 | ||
Aliases: | None | ||
Description: | oligosaccharyltransferase complex subunit (non-catalytic) [Source:HGNC Symbol;Acc:24448] |
Percent Identity: | 60.17 % |
Parental protein coverage: | 62.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MPSAMTVYALVVVSYFLITGGIIYDVIVEPPSVGSMTDEHGHQRPVAFLAYRVNGQYIMEGLASSFLFTM |
.P......A..V......T...I...I.......S.TDE.G.QRP.AF.A.RV.GQYI.EGLASSF..T. | |
Retrocopy | LPWVCMPLAMTVYTLVVVTYFLINRRIIYGYR*TSLTDEQGPQRPMAFSAHRVDGQYIIEGLASSFPHTI |
Parental | GGLGFIILDRSNAPNIPKLNRFLLLFIGFVCVLLSFFMARVFMRMKLP |
GGLGFIILD.SNAPNI..LNRFLLL..GF.CVLLSFFM..VFMRMKLP | |
Retrocopy | GGLGFIILDPSNAPNIQNLNRFLLL-TGFICVLLSFFMVIVFMRMKLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .24 RPM |
SRP017611_kidney | 0 .10 RPM | 14 .70 RPM |
SRP017611_liver | 0 .00 RPM | 9 .25 RPM |