RetrogeneDB ID:

retro_ggor_215

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:6:160011978..160012428(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000023066
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:OSTC
Ensembl ID:ENSGGOG00000026873
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_215
ATGGAGACTTTGTACCGTGTCCCATTCTTAGTGCTCGAATGTCCCAACCTGAAGCTGAAGAAGCCGCCCTGGCTGCACGT
GCTGTCGGCCATGATTGTGTATGCTCTGATGGTGGTGTCTTACTTCCTCGTCACTGGAGGAATAATTTATGATGTTATTG
TTGAACCTCCAAGCGTTGGCTCTATGACTGATGAACACGGGCATCAGAGGCCAGTAGCTTTCTTGGCCTACAGAGTAAAT
GAACAATGTATTATGGAAGGACTTGCATCCAGCTTCCTGTTTACAATAGGAGGTTTCGGTTTCATATTCCTGGACCGATG
GAATGCACCAAATATCCCAAAACTCAATAGATTTCTTCTTCTATTCATTGGATTCGTTTGTGTCCTCTTGAGCTTTTTCA
TAGCTAGAGTATTCATGAGAATGAAACTGCCGGGCTATCTGATGGGTTAG

ORF - retro_ggor_215 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.95 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMETLYRVPFLVLECPNLKLKKPPWLHMPSAMTVYALVVVSYFLITGGIIYDVIVEPPSVGSMTDEHGHQR
METLYRVPFLVLECPNLKLKKPPWLH..SAM.VYAL.VVSYFL.TGGIIYDVIVEPPSVGSMTDEHGHQR
RetrocopyMETLYRVPFLVLECPNLKLKKPPWLHVLSAMIVYALMVVSYFLVTGGIIYDVIVEPPSVGSMTDEHGHQR
ParentalPVAFLAYRVNGQYIMEGLASSFLFTMGGLGFIILDRSNAPNIPKLNRFLLLFIGFVCVLLSFFMARVFMR
PVAFLAYRVN.Q.IMEGLASSFLFT.GG.GFI.LDR.NAPNIPKLNRFLLLFIGFVCVLLSFF.ARVFMR
RetrocopyPVAFLAYRVNEQCIMEGLASSFLFTIGGFGFIFLDRWNAPNIPKLNRFLLLFIGFVCVLLSFFIARVFMR
ParentalMKLPGYLMG
MKLPGYLMG
RetrocopyMKLPGYLMG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 4 .22 RPM
SRP007412_cerebellum 0 .00 RPM 5 .99 RPM
SRP007412_heart 0 .00 RPM 2 .47 RPM
SRP007412_kidney 0 .00 RPM 18 .36 RPM
SRP007412_liver 0 .00 RPM 38 .38 RPM
SRP007412_testis 0 .00 RPM 14 .81 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_215 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_215 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_3686

Parental genes homology:
Parental genes homology involve 24 parental genes, and 77 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000017532 retrocopies
Bos taurus ENSBTAG000000116111 retrocopy
Canis familiaris ENSCAFG0000001128612 retrocopies
Callithrix jacchus ENSCJAG000000160023 retrocopies
Cavia porcellus ENSCPOG000000244671 retrocopy
Dasypus novemcinctus ENSDNOG000000111722 retrocopies
Echinops telfairi ENSETEG000000037174 retrocopies
Homo sapiens ENSG000001988567 retrocopies
Gorilla gorilla ENSGGOG00000026873 6 retrocopies
Loxodonta africana ENSLAFG000000263817 retrocopies
Myotis lucifugus ENSMLUG000000004782 retrocopies
Monodelphis domestica ENSMODG000000205991 retrocopy
Mustela putorius furoENSMPUG000000088691 retrocopy
Mus musculus ENSMUSG000000410841 retrocopy
Nomascus leucogenys ENSNLEG0000001292911 retrocopies
Oryctolagus cuniculus ENSOCUG000000110562 retrocopies
Otolemur garnettii ENSOGAG000000336841 retrocopy
Pan troglodytes ENSPTRG000000242221 retrocopy
Pteropus vampyrus ENSPVAG000000059151 retrocopy
Rattus norvegicus ENSRNOG000000233221 retrocopy
Sus scrofa ENSSSCG000000091451 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000216446 retrocopies
Tarsius syrichta ENSTSYG000000007242 retrocopies
Tursiops truncatus ENSTTRG000000034461 retrocopy



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