RetrogeneDB ID: | retro_hsap_2766 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:32662462..32663121(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000231552 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IGBP1 | ||
Ensembl ID: | ENSG00000089289 | ||
Aliases: | IGBP1, ALPHA-4, IBP1 | ||
Description: | immunoglobulin (CD79A) binding protein 1 [Source:HGNC Symbol;Acc:5461] |
Percent Identity: | 78.38 % |
Parental protein coverage: | 65.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | NPSKRLDHLQRAREHFINYLTQCHCYHVAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYK |
N.S.....LQRAREHFINYLTQCH.YH.A.FEL.KT.NNSAENHTANSSMAYPSLVAMASQRQAKI.RYK | |
Retrocopy | NKSTLASVLQRAREHFINYLTQCHYYHIAKFELLKTKNNSAENHTANSSMAYPSLVAMASQRQAKIERYK |
Parental | QKKELEHRLSAMKSAVESGQADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSS-REASTSNS |
QKKEL.HRLSAMKSAVESGQADDE.VREYYLLHLQR.ID.SLEEIESIDQEIKILRE............S | |
Retrocopy | QKKELDHRLSAMKSAVESGQADDEHVREYYLLHLQRGIDTSLEEIESIDQEIKILRETLED<QSLASNSS |
Parental | SRQERPPVKPFILTRNMAQAKVFGAGYPSLPTMTVSDWYEQHRKYGALPDQGIAKAAPEEFRKAAQQQEE |
.....P.VK.FILTRN.AQAK.FGA.YPSL.TMTVSDWYEQHRKYGALPDQGIA.A.PE.FRKAAQQQ.. | |
Retrocopy | LQERPP-VKSFILTRNTAQAKLFGASYPSLATMTVSDWYEQHRKYGALPDQGIATATPEKFRKAAQQQKY |
Parental | QEEKEEEDDEQT |
QE.KE.EDDE.. | |
Retrocopy | QEVKEGEDDEHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 60 .19 RPM |
bodymap2_adrenal | 0 .00 RPM | 43 .27 RPM |
bodymap2_brain | 0 .00 RPM | 34 .57 RPM |
bodymap2_breast | 0 .00 RPM | 37 .45 RPM |
bodymap2_colon | 0 .00 RPM | 87 .51 RPM |
bodymap2_heart | 0 .00 RPM | 33 .73 RPM |
bodymap2_kidney | 0 .00 RPM | 34 .37 RPM |
bodymap2_liver | 0 .00 RPM | 9 .97 RPM |
bodymap2_lung | 0 .00 RPM | 38 .50 RPM |
bodymap2_lymph_node | 0 .00 RPM | 75 .49 RPM |
bodymap2_ovary | 0 .00 RPM | 98 .47 RPM |
bodymap2_prostate | 0 .00 RPM | 103 .61 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 80 .54 RPM |
bodymap2_testis | 0 .04 RPM | 44 .32 RPM |
bodymap2_thyroid | 0 .00 RPM | 59 .04 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 86 .31 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1873 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007797 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013654 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000012525 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000010797 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014731 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000003397 | 1 retrocopy | |
Felis catus | ENSFCAG00000029688 | 1 retrocopy | |
Homo sapiens | ENSG00000089289 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000027795 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000004179 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013929 | 2 retrocopies | |
Mus musculus | ENSMUSG00000031221 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000747 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000011797 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020435 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000021990 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000005483 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026267 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006214 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |