RetrogeneDB ID: | retro_tsyr_1537 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_483391:1..916(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IGBP1 | ||
Ensembl ID: | ENSTSYG00000006214 | ||
Aliases: | None | ||
Description: | immunoglobulin (CD79A) binding protein 1 [Source:HGNC Symbol;Acc:5461] |
Percent Identity: | 91.48 % |
Parental protein coverage: | 89.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | AAAEDELQLPRLPELFETGKQLLEEVEVTAEPTGSRIVQSKVFKGLDLLEKAAEMLSQLDLFSRNEDLEE |
AAAEDELQL.RLPELFETGKQLLEEVEV.AEPTGS.IVQSKVFKGLD.LEKAAEMLS.LDLFSRNEDLEE | |
Retrocopy | AAAEDELQLLRLPELFETGKQLLEEVEVMAEPTGSQIVQSKVFKGLDFLEKAAEMLS*LDLFSRNEDLEE |
Parental | IASTDLKYLMVPAFQGALTMKQVNPGKRLDHLQQAREHFINYLTQCHYYHVAEFELPKTRNNSAENNTAS |
IASTDLKY.MVPAFQGAL.MKQVNPGK.LDHLQQ.REHFINYLTQ.HYYHVAEF.LPKTRNNSAENNTAS | |
Retrocopy | IASTDLKYPMVPAFQGALSMKQVNPGKHLDHLQQTREHFINYLTQYHYYHVAEFQLPKTRNNSAENNTAS |
Parental | SSMAYPSLVSMASQRQAKIERYKQKKDLEHRLSALKSAVESGQADDERVREYYLLHLQRWISISLEEIES |
SSMAYPSL.S..SQRQ.KIERYKQKKDLEHRLS.LKSAVESGQADDERV.EYYLLHLQRWISISLEEIES | |
Retrocopy | SSMAYPSLISTESQRQVKIERYKQKKDLEHRLSSLKSAVESGQADDERVCEYYLLHLQRWISISLEEIES |
Parental | IDQEMKILREKDSSREASTSHLSRQERPPMKPFILTRDKAQAKVFGAGYPSLASMTVSDWYDQHRKYGAL |
ID.E.KILREKDSSREASTS.L.RQERPPM.PFIL.RDKAQAKVFGAGYPSLASMTVSDWYDQH.KYG.L | |
Retrocopy | ID*ERKILREKDSSREASTSNLFRQERPPMIPFILRRDKAQAKVFGAGYPSLASMTVSDWYDQHQKYGEL |
Parental | PDQGIAKATTEEFKKAAQQQEDQEQ |
PDQGIAKATTEEFKKAAQQQ.DQEQ | |
Retrocopy | PDQGIAKATTEEFKKAAQQQGDQEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007797 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013654 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000012525 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000010797 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014731 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000003397 | 1 retrocopy | |
Felis catus | ENSFCAG00000029688 | 1 retrocopy | |
Homo sapiens | ENSG00000089289 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000027795 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000004179 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013929 | 2 retrocopies | |
Mus musculus | ENSMUSG00000031221 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000747 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000011797 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020435 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000021990 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000005483 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026267 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006214 | 2 retrocopies |
retro_tsyr_1537 , retro_tsyr_2131,
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