RetrogeneDB ID: | retro_nleu_1653 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397302.1:14443995..14444620(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IGBP1 | ||
Ensembl ID: | ENSNLEG00000000747 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.29 % |
Parental protein coverage: | 61.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LDLLEKAAEMLSQLDLFSRNEDLEEIASTDLKYLLVSAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQ |
.DLLEKAAEMLSQL.LFSRNEDLEEIASTDLKYLLV.AFQGALTMKQVNPSKRLDHL..A.EHFIN.LTQ | |
Retrocopy | MDLLEKAAEMLSQLELFSRNEDLEEIASTDLKYLLVLAFQGALTMKQVNPSKRLDHLRWA*EHFINHLTQ |
Parental | CHCYHVAEFELPKTMNNSAENHTVNSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVESGQAD |
CHCYHV..FELPK..NNSAENHT.NSSMAYPSLVA.AS.RQ.KI.RYKQKKELEH.L..MKSAVESGQAD | |
Retrocopy | CHCYHVVKFELPKAKNNSAENHTANSSMAYPSLVAVASRRQGKIERYKQKKELEHKLPEMKSAVESGQAD |
Parental | DERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSS-REASTSNSSRQERPPVKPFILTRNTAQAKV |
DERV.EYYLLHLQRWIDISLEEIESIDQEIKI.RERDSS........S..QERPP.KPFILT.NTAQAKV | |
Retrocopy | DERVCEYYLLHLQRWIDISLEEIESIDQEIKIPRERDSS>EASTSNSS-HQERPPAKPFILTQNTAQAKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007797 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013654 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000012525 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000010797 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014731 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000003397 | 1 retrocopy | |
Felis catus | ENSFCAG00000029688 | 1 retrocopy | |
Homo sapiens | ENSG00000089289 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000027795 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000004179 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013929 | 2 retrocopies | |
Mus musculus | ENSMUSG00000031221 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000747 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000011797 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020435 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000021990 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000005483 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026267 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006214 | 2 retrocopies |