RetrogeneDB ID: | retro_cpor_44 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_20:12514168..12515188(+) | ||
Located in intron of: | ENSCPOG00000010736 | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000022251 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000010797 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAASEDGLELPRLPELFETSKQLLEEVEVTNEPTGSGTIQDKVFKGLDLLEKAAEMLSQLDLFSRNEDLE |
MAASEDGL.LPRLPELFE.S.QLLEEVEV..EPTGS.TIQDKV.KGLDLLE.AAEMLSQLDLFSRNEDLE | |
Retrocopy | MAASEDGLQLPRLPELFESSQQLLEEVEVMDEPTGSRTIQDKVCKGLDLLEQAAEMLSQLDLFSRNEDLE |
Parental | EIASIDLKYLMVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHYYHVAEFQLPKTNNNTAEKNTA |
.I.S.DLKYLMVPAFQGALTMKQVNPSKRLDHLQ.ARE.FINYLT.CHYYHVA.F.LPKT.NNTAE.NTA | |
Retrocopy | DICSTDLKYLMVPAFQGALTMKQVNPSKRLDHLQWAREYFINYLTHCHYYHVADFELPKTKNNTAEINTA |
Parental | SSSVAYANLVTMASQRKAKIERYKQKKEVEHRLSTLKSAVESGQADDEQVREYYLLHLRRWIGISLEEVE |
SSSVA.ANLV.MASQRKAKIERYKQKKEVE.RLS.LKSAVESGQADDEQVREYYLLHLRRWIGISLEEVE | |
Retrocopy | SSSVACANLVAMASQRKAKIERYKQKKEVEQRLSALKSAVESGQADDEQVREYYLLHLRRWIGISLEEVE |
Parental | SIDQEIKILREKDSSREASTSHSPLQDRPPVKSFILTRDKAQAKVFGAGYPSLATMTVSDWYEQHRKYGA |
.IDQEIKILREKDSSREASTSHS.LQDRPP.KSFILTRD..QAKVFGAGYPSLATMTVSDWYEQH...GA | |
Retrocopy | CIDQEIKILREKDSSREASTSHSSLQDRPPLKSFILTRDNTQAKVFGAGYPSLATMTVSDWYEQHQQCGA |
Parental | LPDQGIAKATSVDFRRVAQQQEDEEKEKEDDEKALHRAREWDDWKDTHPRGYGNRQNMG |
LPDQGIAKATS.DF.RVAQQQEDEEKE.ED.EK.LHRAREWDDWK.THPRGYGNRQNMG | |
Retrocopy | LPDQGIAKATSADFKRVAQQQEDEEKEREDNEKVLHRAREWDDWKHTHPRGYGNRQNMG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .40 RPM | 15 .87 RPM |
SRP017611_kidney | 0 .10 RPM | 19 .37 RPM |
SRP017611_liver | 0 .00 RPM | 10 .01 RPM |
SRP040447_lung | 0 .18 RPM | 19 .47 RPM |
SRP040447_skeletal_muscle | 0 .03 RPM | 21 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007797 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013654 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000012525 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000010797 | 1 retrocopy |
retro_cpor_44 ,
|
Dasypus novemcinctus | ENSDNOG00000014731 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000003397 | 1 retrocopy | |
Felis catus | ENSFCAG00000029688 | 1 retrocopy | |
Homo sapiens | ENSG00000089289 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000027795 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000004179 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013929 | 2 retrocopies | |
Mus musculus | ENSMUSG00000031221 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000747 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000011797 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020435 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000021990 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000005483 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026267 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006214 | 2 retrocopies |