Parental gene: | ENSCJAG00000012525 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | X:62075797..62108537(+) |
>ENSCJAG00000012525
ATGGCCGCTGAAGACGAGTTACTGCTGCCGCGGCTCCCAGAGCTATTCGAAAGCAGCAAACAGCTGCTAGATGAAGTAGA
AGTAGCGACTGAACCCGCCGGTTCCCGGATAGTCCAGGAGAAGGTGTTCAAGGGCCTGGACCTCCTTGAGAAGGCTGCCG
AAATGTTAAAGCAGCTCGACTTGTTCAGCCGAAATGAAGATTTGGAAGAGATTGCTTCCACCGACCTGAAGTATCTGTTG
GTGCCAGCGTTTCAAGGAGCCCTCACCATGAAACAGGTCAACCCCAGCAAGCGTCTAGATCATTTGCAGCAGGCTCGAGA
ACACTTTATAAACTACTTAACTGAATGCCGTTGCCATCATGTGGCAGAGTTTGAGCTGCCCAAAACCAAGGACAACTCAG
CTGAAAATCACACTGCTAATTCCTCCATGGCTTATCCTAGCCTCGTTGCTATGGCATCTCAAAGACAGGCTAAAATAGAG
AGATACAAGCAGAAGAAGGAGTTGGAACATAGGTTGTCTACAATGAAATCTGCTGTGGAAAGTGGTCAAGCAGATGATGA
GCGTGTTCGTGAATATTATCTTCTTCACCTTCAGAGGTGGATTGATATCAGCTTAGAAGAGATTGAGAGCATTGACCAGG
AAATAAAGATCCTGAGAGAAAGAGGCTCTTCAAGAGAGGCATCAACTTCTAACGCATCTCGCCTTGAGAGGCCTCCAATG
AAACCCTTCATTCTCACTCGGAACACAGCCCAAGCCAAAGTATTTGGAGCTGGTTATCCAAGTCTGGCAACTATGACGGT
GAGTGACTGGTATGAGCAACATCGGAAACATGGAGCATTACCAGATCAGGGAATAGCCAAGGAAACGCCAGAAGAATTCA
GAAAAGCAGCTCAGCAACAGGAAAATCAAGAAAAAAAGGAGGAAGACGACGATGAACAAACACTGTACAGAGCTCGGGAG
TGGGATGACTGGAAGGACACCCATCCTAGAGGCTATGGCAACCGACAGAACATGGGCTGA
ATGGCCGCTGAAGACGAGTTACTGCTGCCGCGGCTCCCAGAGCTATTCGAAAGCAGCAAACAGCTGCTAGATGAAGTAGA
AGTAGCGACTGAACCCGCCGGTTCCCGGATAGTCCAGGAGAAGGTGTTCAAGGGCCTGGACCTCCTTGAGAAGGCTGCCG
AAATGTTAAAGCAGCTCGACTTGTTCAGCCGAAATGAAGATTTGGAAGAGATTGCTTCCACCGACCTGAAGTATCTGTTG
GTGCCAGCGTTTCAAGGAGCCCTCACCATGAAACAGGTCAACCCCAGCAAGCGTCTAGATCATTTGCAGCAGGCTCGAGA
ACACTTTATAAACTACTTAACTGAATGCCGTTGCCATCATGTGGCAGAGTTTGAGCTGCCCAAAACCAAGGACAACTCAG
CTGAAAATCACACTGCTAATTCCTCCATGGCTTATCCTAGCCTCGTTGCTATGGCATCTCAAAGACAGGCTAAAATAGAG
AGATACAAGCAGAAGAAGGAGTTGGAACATAGGTTGTCTACAATGAAATCTGCTGTGGAAAGTGGTCAAGCAGATGATGA
GCGTGTTCGTGAATATTATCTTCTTCACCTTCAGAGGTGGATTGATATCAGCTTAGAAGAGATTGAGAGCATTGACCAGG
AAATAAAGATCCTGAGAGAAAGAGGCTCTTCAAGAGAGGCATCAACTTCTAACGCATCTCGCCTTGAGAGGCCTCCAATG
AAACCCTTCATTCTCACTCGGAACACAGCCCAAGCCAAAGTATTTGGAGCTGGTTATCCAAGTCTGGCAACTATGACGGT
GAGTGACTGGTATGAGCAACATCGGAAACATGGAGCATTACCAGATCAGGGAATAGCCAAGGAAACGCCAGAAGAATTCA
GAAAAGCAGCTCAGCAACAGGAAAATCAAGAAAAAAAGGAGGAAGACGACGATGAACAAACACTGTACAGAGCTCGGGAG
TGGGATGACTGGAAGGACACCCATCCTAGAGGCTATGGCAACCGACAGAACATGGGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 12 .92 RPM |
| SRP051959_skeletal_muscle | 11 .71 RPM |
| SRP051959_lymph_node | 10 .09 RPM |
| SRP051959_lung | 11 .39 RPM |
| SRP051959_liver | 10 .38 RPM |
| SRP051959_kidney | 12 .87 RPM |
| SRP051959_heart | 11 .02 RPM |
| SRP051959_colon | 8 .25 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000007797 | ortholog_many2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000013654 | ortholog_one2many | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000010797 | ortholog_many2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000014731 | ortholog_one2many | 5 retrogenes | |
| Echinops telfairi | ENSETEG00000003397 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000029688 | ortholog_many2many | 1 retrogene | |
| Homo sapiens | ENSG00000089289 | ortholog_one2many | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000027795 | ortholog_many2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000004179 | ortholog_many2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000013929 | ortholog_many2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000031221 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000000747 | ortholog_one2many | 5 retrogenes | |
| Otolemur garnettii | ENSOGAG00000011797 | ortholog_many2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000020435 | ortholog_one2many | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000021990 | ortholog_one2many | 5 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000005483 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000026267 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000006214 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_47 | 80.53 | 99.71 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_111 | 95.88 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1225 | 98.23 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2278 | 75.95 | 99.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_2968 | 77.78 | 79.06 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_3417 | 75.66 | 99.71 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000012525 retrocopies