Parental gene: | IGBP1, ENSPTRG00000021990 |
| Aliases: | None |
| Description: | immunoglobulin (CD79A) binding protein 1 [Source:HGNC Symbol;Acc:5461] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | X:69843935..69873144(+) |
>ENSPTRG00000021990
ATGGCTGCTGAGGACGAGTTACAGCTGCCGCGGCTCCCCGAGCTGTTCGAAACTGGTAAACAGTTACTGGACGAAGTAGA
TGAAGATTTGGAAGAGATTGCTTCCACGACCCTGAAGTACCTTTTGGTGCCAGCGTTTCAAGGAGCCCTCACCATGAAAC
AAGTCAACCCCAGCAAGCGTCTAGATCATTTGCAGCGGGCTCGAGAACACTTTATAAACTACTTAACTCAGTGCCATTGC
TATCATGTGGCAGAGTTTGAGCTGCCCAAAACCATGAACAACTCTGCTGAAAATCACACTGCCAATTCCTCCATGGCTTA
TCCTAGTCTCGTTGCTATGGCATCTCAAAGACAGGCTAAAATACAGAGATACAAGCAGAAGAAGGAGTTGGAGCATAGGT
TGTCTGCAATGAAATCTGCTGTGGAAAGTGGTCAAGCAGATGATGAGCGTGTTCGTGAATATTATCTTCTTCACCTTCAG
AGGTGGATTGATATCAGCTTAGAAGAGATTGAGAGCATTGACCAGGAAATAAAGATCCTGAGAGAAAGAGACTCTTCAAG
AGAGGCATCAACTTCTAACTCATCTCGCCAGGAGAGGCCTCCAGTGAAACCCTTCATTCTCACTCGGAACACGGCCCAAG
CCGAATTCAGAAAAGCAGCTCAGCAACAGGAAGAACAAGAAGAAAAGGAGGAAGAGGATGATGAACAAACACTCCACAGA
GCCCGGGAGTGGGATGACTGGAAGGACACCCATCCTAGGGGCTATGGCAACCGACAGAACATGGGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 19 .05 RPM |
| SRP007412_cerebellum | 26 .28 RPM |
| SRP007412_heart | 17 .72 RPM |
| SRP007412_kidney | 24 .63 RPM |
| SRP007412_liver | 9 .20 RPM |
| SRP007412_testis | 19 .18 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000007797 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000013654 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000012525 | ortholog_one2many | 6 retrogenes | |
| Cavia porcellus | ENSCPOG00000010797 | ortholog_one2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000014731 | ortholog_one2one | 5 retrogenes | |
| Echinops telfairi | ENSETEG00000003397 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000029688 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000089289 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000027795 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000004179 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000013929 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000031221 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000000747 | ortholog_one2one | 5 retrogenes | |
| Otolemur garnettii | ENSOGAG00000011797 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000020435 | ortholog_one2one | 4 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000005483 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000026267 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000006214 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_901 | 88.49 | 52.67 | Please wait, loading  |
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| 2. | retro_ptro_1233 | 85.71 | 72.14 | Please wait, loading |
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| 3. | retro_ptro_1873 | 80.12 | 61.07 | Please wait, loading |
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| 4. | retro_ptro_1973 | 77.65 | 64.50 | Please wait, loading |
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| 5. | retro_ptro_1982 | 84.74 | 72.14 | Please wait, loading |
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Download FASTA sequences of all ENSPTRG00000021990 retrocopies