RetrogeneDB ID: | retro_hsap_607 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 10:90636143..90636865(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000234256 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTCD2 | ||
Ensembl ID: | ENSG00000049883 | ||
Aliases: | None | ||
Description: | pentatricopeptide repeat domain 2 [Source:HGNC Symbol;Acc:25734] |
Percent Identity: | 70.9 % |
Parental protein coverage: | 62.63 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | MVRDSMAAAFRPSNRVLLQALQILVYPGVGGSGSVSCRCPLGAKRYLLTDNVVKLKEFQQKKVAVACNLS |
.V.DSMAAAF..S...LL.ALQI.VYPG..GSGS..C.CPLGAKRYLLTDN..KLKEFQ.KKVAV..NL. | |
Retrocopy | IV*DSMAAAFWSSR*ALLPALQISVYPGMRGSGSTCCHCPLGAKRYLLTDNIMKLKEFQHKKVAVEYNLP |
Parental | GTKETYFRNLKKKLTQNKLILKGELITLLHLCESRDHVELAKNVIYRYHAENKNFTLGEYKFGPLFVRLC |
GTK..YFRNL..KL..NKLILKG.L.TLLHL.ES.DHVELAKN.I..YH.ENKN.TL.E.KFGPLF.RLC | |
Retrocopy | GTK*IYFRNLEEKLN*NKLILKGKLRTLLHLRESWDHVELAKNIICKYHTENKNVTLAEFKFGPLFIRLC |
Parental | YELDLEESAVELMKDQHLRGFFSDSTSFNILMDMLFIKGKYKSALQVLIEMKNQDVKFTK-DTYVLAFAI |
Y...LEESA.EL.KD..L...FSDST.F.ILM.MLFIK.KY.SAL..L.EMKN.D.KFT..DTYVL.FAI | |
Retrocopy | YDSNLEESAMELRKDEYLQR-FSDSTQFTILMVMLFIKSKYISALEILTEMKNPDGKFTR<DTYVLDFAI |
Parental | CYKLNSPESFKICTTLREEALLKGEILSRRASCF |
..K.NS.ESF..CTTLR.EAL.KG..LSRRASCF | |
Retrocopy | GHKMNSSESF*VCTTLRKEALIKG-VLSRRASCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 3 .50 RPM |
bodymap2_adrenal | 0 .00 RPM | 3 .89 RPM |
bodymap2_brain | 0 .02 RPM | 6 .75 RPM |
bodymap2_breast | 0 .00 RPM | 7 .18 RPM |
bodymap2_colon | 0 .00 RPM | 4 .85 RPM |
bodymap2_heart | 0 .00 RPM | 8 .33 RPM |
bodymap2_kidney | 0 .00 RPM | 8 .13 RPM |
bodymap2_liver | 0 .00 RPM | 4 .18 RPM |
bodymap2_lung | 0 .00 RPM | 1 .65 RPM |
bodymap2_lymph_node | 0 .00 RPM | 2 .98 RPM |
bodymap2_ovary | 0 .02 RPM | 7 .06 RPM |
bodymap2_prostate | 0 .00 RPM | 10 .69 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 5 .15 RPM |
bodymap2_testis | 0 .25 RPM | 6 .66 RPM |
bodymap2_thyroid | 0 .00 RPM | 7 .44 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 3 .17 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_447 |
Gorilla gorilla | retro_ggor_534 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016364 | 1 retrocopy | |
Homo sapiens | ENSG00000049883 | 2 retrocopies |
retro_hsap_1388, retro_hsap_607 ,
|
Gorilla gorilla | ENSGGOG00000010695 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000017908 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004516 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000008390 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016968 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006596 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |