RetrogeneDB ID: | retro_mmul_2240 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:83228737..83229425(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTCD2 | ||
Ensembl ID: | ENSMMUG00000017908 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MTDDHLRGFFSDSTSFNILMDMLFIKGKYESALEVLIEMKNQDVKFTKDTYVLAFAICYKLHCGHSSEVC |
M.D.HL.G.FS.STSFNILMDML..KG.Y.SALEVLIEMKNQ.VKFTKDTYVL.FA.CYKL....S...C | |
Retrocopy | MKDQHL*GSFSESTSFNILMDMLVVKGRYKSALEVLIEMKNQSVKFTKDTYVLTFAVCYKLNSPESFKIC |
Parental | FPSGANVLILNVFIFRKLKLAISDSFMGKNELAKAVSI-FSQIMNPESIACTNLNVIIHIQSN-ALENLI |
.......L.......RK............N..AKA.SI.FSQIMNPESIACTNL..II.IQSN..LE.LI | |
Retrocopy | STLREEALLKGQVLSRKASHFFVV*TLNQNQVAKAMSI>FSQIMNPESIACTNLTIIIYIQSN>MLETLI |
Parental | ETLTNAAEGNLSKFVKRHMFSEEVLAKVRE-KVKDVPALVAKFDEIYGKLHISGQVTNYSLDAVLCYTPR |
E.L.NAAEGNL.KFVKRH.FSEEVLAKV.E.KVKDVPALVA.F.EIYGKLHISGQVT...L.A.LC.TPR | |
Retrocopy | EILKNAAEGNLLKFVKRHEFSEEVLAKVKE<KVKDVPALVARFNEIYGKLHISGQVTTCTLGALLCHTPR |
Parental | DKKSHTLLLNKRMVIRRTFRPL |
D.K.H.LLLNKRM...RTF..L | |
Retrocopy | DRKYHMLLLNKRMMTHRTFQSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .78 RPM | 11 .88 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 9 .36 RPM |
SRP007412_cerebellum | 0 .58 RPM | 7 .36 RPM |
SRP007412_heart | 0 .35 RPM | 15 .02 RPM |
SRP007412_kidney | 0 .35 RPM | 12 .68 RPM |
SRP007412_liver | 0 .16 RPM | 7 .09 RPM |
SRP007412_testis | 0 .23 RPM | 4 .11 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016364 | 1 retrocopy | |
Homo sapiens | ENSG00000049883 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000010695 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000017908 | 1 retrocopy |
retro_mmul_2240 ,
|
Nomascus leucogenys | ENSNLEG00000004516 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000008390 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016968 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006596 | 1 retrocopy |