RetrogeneDB ID: | retro_ptro_952 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 14:19446839..19447550(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTCD2 | ||
Ensembl ID: | ENSPTRG00000016968 | ||
Aliases: | None | ||
Description: | Pan troglodytes pentatricopeptide repeat domain 2 (PTCD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001246655] |
Percent Identity: | 79.25 % |
Parental protein coverage: | 61.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | LMKDQHLRGFFSDSTSFNILMDMLFIKGKYKSALQVLIEMKNQDVKFTKD-TYVLAFAICYKLNSPESFK |
LMKDQHL...FSDSTSFNILMDMLFI.GKY.SAL.VLIEMKNQ.VKFTKD..YVL.FA.C.KL.SPESFK | |
Retrocopy | LMKDQHL*DSFSDSTSFNILMDMLFIQGKYQSALEVLIEMKNQGVKFTKD<SYVLSFAVCNKLKSPESFK |
Parental | ICTTLREEALLKGEILSRRASCFAVALALNQNEMAKAMSIF-SQIMNPESIACINLNIIIHIQSNMLENL |
IC.TLREEA.LKGE.LSRRAS.F.V.LALNQN..AKAMSIF.SQ.MNPESIAC.NL.IIIHIQSNMLE.L | |
Retrocopy | ICSTLREEAPLKGEVLSRRASRFFVVLALNQNQVAKAMSIF>SQTMNPESIACTNLTIIIHIQSNMLETL |
Parental | IKTL-KNAAEGNLSKFVRRHVFSEEVLAKVRE-KVKDVPALVAKFDEIYGTLHITGQVTTDSLDAVLCHT |
I.TL.KNAAEGNL.KFV.RH.FSEEVLAKV.E.KVKD.PALVA.F.EIYG.LHI.GQVTT..L...LCHT | |
Retrocopy | IETL>KNAAEGNLLKFVKRHAFSEEVLAKVKE<KVKDMPALVARFNEIYGKLHISGQVTTCTLGTLLCHT |
Parental | PRDRKSHTLLLNKRMVSRRTFQPLSQSLLAE |
PRDR.SH.LLLNKRM.S..TFQPL.QS.LAE | |
Retrocopy | PRDRRSHMLLLNKRMMSHWTFQPLNQSFLAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 8 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .60 RPM |
SRP007412_heart | 0 .00 RPM | 8 .51 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .96 RPM |
SRP007412_liver | 0 .00 RPM | 4 .39 RPM |
SRP007412_testis | 0 .11 RPM | 6 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1388 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016364 | 1 retrocopy | |
Homo sapiens | ENSG00000049883 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000010695 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000017908 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004516 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000008390 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016968 | 2 retrocopies |
retro_ptro_447, retro_ptro_952 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000006596 | 1 retrocopy |