Parental gene: | PTCD2, ENSG00000049883 |
| Aliases: | None |
| Description: | pentatricopeptide repeat domain 2 [Source:HGNC Symbol;Acc:25734] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 5:71616193..71656052(+) |
>ENSG00000049883
ATGGTCCGAGACAGTATGGCTGCTGCATTTCGGCCCTCGAATCGAGTTCTCCTGCAGGCGCTGCAGATTTTGGTGTATCC
TGGGGTGGGAGGCTCCGGCTCTGTCAGCTGCCGCTGCCCTCTCGGAGCTAAAAGATACCTACTTACAGATAATGTGGTGA
AATTAAAAGAATTTCAACAAAAGAAAGTGGCTGTTGCATGTAATCTTTCTGGCACTAAAGAAACGTATTTTAGAAACTTG
AAAAAGAAACTGACCCAGAACAAGCTCATCTTGAAGGGGGAGTTGATAACCTTACTACATTTGTGTGAGTCTCGGGACCA
TGTGGAACTGGCTAAAAATGTCATTTACAGGTACCATGCAGAGAACAAAAATTTCACTTTGGGGGAGTATAAATTTGGAC
CGCTTTTTGTGAGGTTGTGTTACGAGTTGGATCTCGAGGAATCTGCAGTGGAGCTCATGAAAGACCAGCATTTACGAGGT
TTCTTCTCAGACTCCACATCATTCAATATTTTGATGGATATGTTATTTATCAAAGGCAAATATAAAAGTGCTTTGCAAGT
ATTGATAGAGATGAAAAACCAAGATGTGAAGTTCACCAAAGATACCTATGTTCTTGCTTTTGCAATTTGCTACAAACTGA
ATAGCCCTGAGTCTTTCAAAATCTGTACTACATTAAGAGAAGAAGCTCTACTCAAAGGAGAAATTCTCTCCAGGAGAGCA
TCCTGTTTCGCTGTGGCATTAGCTCTGAATCAGAATGAGATGGCAAAAGCTGTGTCCATTTTTTCTCAAATCATGAATCC
AGAAAGCATAGCCTGCATTAATTTAAATATTATAATCCATATCCAGTCAAATATGTTGGAAAACCTGATAAAGACTCTAA
AAAATGCTGCAGAAGGAAATTTATCAAAATTTGTGAAAAGACATGTGTTCTCGGAGGAAGTGCTGGCCAAAGTGAGGGAA
AAAGTGAAGGATGTGCCTGCCCTTGTGGCCAAATTTGATGAGATCTATGGGACACTGCACATCACTGGCCAGGTCACCAC
TGATTCTTTGGATGCTGTGCTCTGCCACACCCCCAGGGACAGGAAATCTCACACGTTGCTATTAAACAAGAGGATGGTCA
GCCGTCGCACCTTCCAGCCACTCAGCCAGTCCCTGTTGGCTGAGTAA
ATGGTCCGAGACAGTATGGCTGCTGCATTTCGGCCCTCGAATCGAGTTCTCCTGCAGGCGCTGCAGATTTTGGTGTATCC
TGGGGTGGGAGGCTCCGGCTCTGTCAGCTGCCGCTGCCCTCTCGGAGCTAAAAGATACCTACTTACAGATAATGTGGTGA
AATTAAAAGAATTTCAACAAAAGAAAGTGGCTGTTGCATGTAATCTTTCTGGCACTAAAGAAACGTATTTTAGAAACTTG
AAAAAGAAACTGACCCAGAACAAGCTCATCTTGAAGGGGGAGTTGATAACCTTACTACATTTGTGTGAGTCTCGGGACCA
TGTGGAACTGGCTAAAAATGTCATTTACAGGTACCATGCAGAGAACAAAAATTTCACTTTGGGGGAGTATAAATTTGGAC
CGCTTTTTGTGAGGTTGTGTTACGAGTTGGATCTCGAGGAATCTGCAGTGGAGCTCATGAAAGACCAGCATTTACGAGGT
TTCTTCTCAGACTCCACATCATTCAATATTTTGATGGATATGTTATTTATCAAAGGCAAATATAAAAGTGCTTTGCAAGT
ATTGATAGAGATGAAAAACCAAGATGTGAAGTTCACCAAAGATACCTATGTTCTTGCTTTTGCAATTTGCTACAAACTGA
ATAGCCCTGAGTCTTTCAAAATCTGTACTACATTAAGAGAAGAAGCTCTACTCAAAGGAGAAATTCTCTCCAGGAGAGCA
TCCTGTTTCGCTGTGGCATTAGCTCTGAATCAGAATGAGATGGCAAAAGCTGTGTCCATTTTTTCTCAAATCATGAATCC
AGAAAGCATAGCCTGCATTAATTTAAATATTATAATCCATATCCAGTCAAATATGTTGGAAAACCTGATAAAGACTCTAA
AAAATGCTGCAGAAGGAAATTTATCAAAATTTGTGAAAAGACATGTGTTCTCGGAGGAAGTGCTGGCCAAAGTGAGGGAA
AAAGTGAAGGATGTGCCTGCCCTTGTGGCCAAATTTGATGAGATCTATGGGACACTGCACATCACTGGCCAGGTCACCAC
TGATTCTTTGGATGCTGTGCTCTGCCACACCCCCAGGGACAGGAAATCTCACACGTTGCTATTAAACAAGAGGATGGTCA
GCCGTCGCACCTTCCAGCCACTCAGCCAGTCCCTGTTGGCTGAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 4 .18 RPM |
| bodymap2_lung | 1 .65 RPM |
| bodymap2_breast | 7 .18 RPM |
| bodymap2_adipose | 3 .50 RPM |
| bodymap2_adrenal | 3 .89 RPM |
| bodymap2_skeletal_muscle | 5 .15 RPM |
| bodymap2_thyroid | 7 .44 RPM |
| bodymap2_prostate | 10 .69 RPM |
| bodymap2_colon | 4 .85 RPM |
| bodymap2_testis | 6 .66 RPM |
| bodymap2_brain | 6 .75 RPM |
| bodymap2_heart | 8 .33 RPM |
| bodymap2_white_blood_cells | 3 .17 RPM |
| bodymap2_lymph_node | 2 .98 RPM |
| bodymap2_ovary | 7 .06 RPM |
| bodymap2_kidney | 8 .13 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000016364 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000010695 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000017908 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004516 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000008390 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000016968 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000006596 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_607 | 70.90 | 62.63 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_1388 | 78.42 | 61.08 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000049883 retrocopies